Non-Coding RNA Search

Ss1.1-Pig4-TMW8008D11.5

Sequence:


               
               ATTCGATGGAAGAATTAGGTTGCATCAGCCCCCTTGAAACCTGCCTCATTTCTTCCTTTC
CTGCCTGTGAACGTGGAGAGCACTCTTCTGAGGGAGAGTTACAGCTTCATGTCATCTGGG
CCCGCCATCAGCACCCAGAGCCTGCTACTCTGGGGACTGAAACCTGGGCACCGACCGTGT
CAGATGATCTTCTCTCCAGGAGCCATCATATACGGGCCAGGATCTAAAGTTCTGCCTCAT
CATGAGAAAGACTCTCCCCCTGGTGCTCACGTGAAGGTGGGAATAACTTCCGGATTGGGC
CCATATTGGGCCAGATCCCTCTTGGTCTGAGGAATGTGCCTGCTCCTGAAAAGAAGTCTC
CTAGACCAAGAGGTACAGGTGTCATAGGGTGGCCACTCCATTCCCCTTAGTTAATTATGA
CCCTGGACTTGGTGCTGGACATGGGCACTTCTGCTCAGATCAGAACAGAATCAGATGGCT
CTTGCTCTCCTAAGGGGCCTTAGGAAGTGCTGCCAGTGTTGGCAGGACCTGTTGGAGGCA
CCCTCACACCAGACTGTACAGAGTCCTCTGCAGCCTGGCAGACTGCCCACAAGACCTTGT
GTTTGCTCAGCCGGCATCCCTTGGCTCCCCAGTCTACCCTTTGTACAAAATCCATGGTTC
CCCTCTCACTTGTCCCCCGAGATGGCCTTGTGTGGGAGGTAAGAACGTCCCTTTGCCTCC
CCCTCTGCTTCCCCGACCCAGCCCAACCTGATCTGCAGCGCTGCTTTAGTCATGCTAGGG
AGAGCTCTCCCTTTATGGACAAATCTCATAATTTCACTAGGAGCTTCCCCGAGTTTCACC
AGGGCTGAACTCAGCAGCATTTCTGTTAGGCTGTTCAGATGGAGGTTTTAGTTTCATGGT
TGGTTTTCAAGAGGATATCCTGCCCTGGGCCAGTACTGGCCTTTCTTCTCTGTGACTGAG
CTGGCCTTCCCAGACATGCCTAGACTCCTAATAAAGCTGTTTCTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGATGGAAGAATTAGGTTGCATCAGCCCCCTTGAAACCTGCCTCATTTCTTCCTTTC
CTGCCTGTGAACGTGGAGAGCACTCTTCTGAGGGAGAGTTACAGCTTCATGTCATCTGGG
CCCGCCATCAGCACCCAGAGCCTGCTACTCTGGGGACTGAAACCTGGGCACCGACCGTGT
CAGATGATCTTCTCTCCAGGAGCCATCATATACGGGCCAGGATCTAAAGTTCTGCCTCAT
CATGAGAAAGACTCTCCCCCTGGTGCTCACGTGAAGGTGGGAATAACTTCCGGATTGGGC
CCATATTGGGCCAGATCCCTCTTGGTCTGAGGAATGTGCCTGCTCCTGAAAAGAAGTCTC
CTAGACCAAGAGGTACAGGTGTCATAGGGTGGCCACTCCATTCCCCTTAGTTAATTATGA
CCCTGGACTTGGTGCTGGACATGGGCACTTCTGCTCAGATCAGAACAGAATCAGATGGCT
CTTGCTCTCCTAAGGGGCCTTAGGAAGTGCTGCCAGTGTTGGCAGGACCTGTTGGAGGCA
CCCTCACACCAGACTGTACAGAGTCCTCTGCAGCCTGGCAGACTGCCCACAAGACCTTGT
GTTTGCTCAGCCGGCATCCCTTGGCTCCCCAGTCTACCCTTTGTACAAAATCCATGGTTC
CCCTCTCACTTGTCCCCCGAGATGGCCTTGTGTGGGAGGTAAGAACGTCCCTTTGCCTCC
CCCTCTGCTTCCCCGACCCAGCCCAACCTGATCTGCAGCGCTGCTTTAGTCATGCTAGGG
AGAGCTCTCCCTTTATGGACAAATCTCATAATTTCACTAGGAGCTTCCCCGAGTTTCACC
AGGGCTGAACTCAGCAGCATTTCTGTTAGGCTGTTCAGATGGAGGTTTTAGTTTCATGGT
TGGTTTTCAAGAGGATATCCTGCCCTGGGCCAGTACTGGCCTTTCTTCTCTGTGACTGAG
CTGGCCTTCCCAGACATGCCTAGACTCCTAATAAAGCTGTTTCTTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-312, + strand, RNAz p=0.599326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-312, + strand, RNAz p=0.599326

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022067, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022067, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1005, gnl|bosTau2|chr10 (61159590-61158592)
               

               
               1-1005, gnl|Hg17|chr14 (76963729-76962784)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1005, gnl|bosTau2|chr10 (61159590-61158592)
               

               
               1-1005, gnl|Hg17|chr14 (76963729-76962784)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hea (0.204499)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-1005, gnl\|bosTau2\|chr10 (61159590-61158592)
	1-1005, gnl\|Hg17\|chr14 (76963729-76962784)

	hea (0.204499)
	ill (0.175593)
	mcp (0.170648)
	cje (0.165235)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)