Ss1.1-Pig4-TMW8008E22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGACCGGCAGGCCTAGCTCCGCGACGACGGCGGCGGCGGCGTGGGAATGGAGCCCCTG CGGGTCCTGGAGCTGTACAGCGGCATTGGGGGCATGCACCAGGCGCTGAGAGAAAGCTGT ATACCTGCGCAAGTGGTGGCTGCCATTGATGTAAACACCGTCGCTAACGAAGTATACAAG TATAATTTTCCTCACACACAGTTACTGGCCAAGACAATTGAAGGTGTTACACTAGAAGAA TTTGACAGATTATCTTTCAATATGGTTTTAATGAGCCCTCCCTGTCAGCCATTTACAAGA ATTGGCCTGCAAGGTGATGTGATGGATCCGAGGACAAATAGCTTCTTATATATTCTAGAC ATTCTCCCAAGATTGCAAAAATTACCAAAGTATATTCTTCTAGAAAATGTTAAAGGTTTT GAAGTATCTTCAACAAGAGACCTATTAATACAAACAATAGAAAATTGTGGCTTTCAGTAC CAAGAATTTCTCTTGTCTCCAACCTCTCTTGGCATTCCAAATTCAAGGCTACGGTATTTC CTCATTGCAAAGCTTCAGTCAGAGCCATTCCCTTTTCAAGCCCCTGGTCAGGTGCTAATG GAGTTCCCCCAAATGGAATCTGAACATCCACAAAAACACGCAATAGATGCACAAAGTAAA ATCGAAGAAAAGAAAATTGAACGAAATATTTGCTTGGATAGCAGTGCACAATGTTCTGGA AAAGAGGCCATTCTTTTCAAGCTTGAAACTGCAGGAGAAATTGACAGGAAACATCAACAG GACAGTGATCTCTCTGTGCAAATGCTAAAAGGTTTTCTTGAAGATGACATTGACATGAAC TCGTACTTTTTACCGCCAAAGTCGTTGCTCCGATATGCTCTTTTGTTAGACATTGTTAAG CCCACTTCCAGAAGATCCATGTGCTTTACGAAAGGTTATGGACGCTACATAGAAGGGACA GGATCTGTGTTACAGACCTCAGAAGATGTGCAGATTGAGAATATCTACAAATCCCTTACC AGTTTGTCACCAGAAGAAAAGATAATGAAATTGTTAATGCTTAAACTTCGATTTTTCACT CCTAAAGAAATAGCAAATCTCCTTGGATTTCCTCCAGAGTTCGGATTTCCTGAGAAGATA ACAGTCAAACAGCGTTATCGTCTACTTGGAAATAGTCTCAACGTGCATGTTGTAGCTAAA CTAATCAAAATCCTGTATGAGTAATTTTTGAGTAGCTCTGCGAGGTGGTTCCAGTATTCC ATCATATCCAAATAGTAATTTTGAAAAATTTTTTAGTTAATTTTGACAAAATTCAGCTAA ATTATCTTAACCTCTCTTTAATAAGAAATTTCATCTTGAGTTTCTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGACCGGCAGGCCTAGCTCCGCGACGACGGCGGCGGCGGCGTGGGAATGGAGCCCCTG CGGGTCCTGGAGCTGTACAGCGGCATTGGGGGCATGCACCAGGCGCTGAGAGAAAGCTGT ATACCTGCGCAAGTGGTGGCTGCCATTGATGTAAACACCGTCGCTAACGAAGTATACAAG TATAATTTTCCTCACACACAGTTACTGGCCAAGACAATTGAAGGTGTTACACTAGAAGAA TTTGACAGATTATCTTTCAATATGGTTTTAATGAGCCCTCCCTGTCAGCCATTTACAAGA ATTGGCCTGCAAGGTGATGTGATGGATCCGAGGACAAATAGCTTCTTATATATTCTAGAC ATTCTCCCAAGATTGCAAAAATTACCAAAGTATATTCTTCTAGAAAATGTTAAAGGTTTT GAAGTATCTTCAACAAGAGACCTATTAATACAAACAATAGAAAATTGTGGCTTTCAGTAC CAAGAATTTCTCTTGTCTCCAACCTCTCTTGGCATTCCAAATTCAAGGCTACGGTATTTC CTCATTGCAAAGCTTCAGTCAGAGCCATTCCCTTTTCAAGCCCCTGGTCAGGTGCTAATG GAGTTCCCCCAAATGGAATCTGAACATCCACAAAAACACGCAATAGATGCACAAAGTAAA ATCGAAGAAAAGAAAATTGAACGAAATATTTGCTTGGATAGCAGTGCACAATGTTCTGGA AAAGAGGCCATTCTTTTCAAGCTTGAAACTGCAGGAGAAATTGACAGGAAACATCAACAG GACAGTGATCTCTCTGTGCAAATGCTAAAAGGTTTTCTTGAAGATGACATTGACATGAAC TCGTACTTTTTACCGCCAAAGTCGTTGCTCCGATATGCTCTTTTGTTAGACATTGTTAAG CCCACTTCCAGAAGATCCATGTGCTTTACGAAAGGTTATGGACGCTACATAGAAGGGACA GGATCTGTGTTACAGACCTCAGAAGATGTGCAGATTGAGAATATCTACAAATCCCTTACC AGTTTGTCACCAGAAGAAAAGATAATGAAATTGTTAATGCTTAAACTTCGATTTTTCACT CCTAAAGAAATAGCAAATCTCCTTGGATTTCCTCCAGAGTTCGGATTTCCTGAGAAGATA ACAGTCAAACAGCGTTATCGTCTACTTGGAAATAGTCTCAACGTGCATGTTGTAGCTAAA CTAATCAAAATCCTGTATGAGTAATTTTTGAGTAGCTCTGCGAGGTGGTTCCAGTATTCC ATCATATCCAAATAGTAATTTTGAAAAATTTTTTAGTTAATTTTGACAAAATTCAGCTAA ATTATCTTAACCTCTCTTTAATAAGAAATTTCATCTTGAGTTTCTCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 111-231, gnl|bosTau2|chr13 (19839508-19839387) | |
| 111-231, gnl|canFam2|chr2 (22568656-22568552) | |
| 111-231, gnl|dasNov1|scaffold_89265 (5895-5799) | |
| 111-231, gnl|echTel1|scaffold_101807 (1806-1910) | |
| 111-231, gnl|galGal2|chr2 (19130835-19130734) | |
| 111-231, gnl|hg17|chr10 (17256548-17256649) | |
| 111-231, gnl|Hg17|chr10 (17256667-17256549) | |
| 111-231, gnl|loxAfr1|scaffold_115700 (5685-5581) | |
| 111-231, gnl|mm7|chr2 (13472534-13472635) | |
| 111-231, gnl|Mm7|chr2 (13472653-13472533) | |
| 111-231, gnl|monDom2|scaffold_7 (52409193-52409089) | |
| 111-231, gnl|oryCun1|scaffold_196632 (8254-8155) | |
| 111-231, gnl|panTro1|chr8 (17784254-17784355) | |
| 111-231, gnl|rheMac2|chr9 (17466837-17466938) | |
| 111-231, gnl|rn3|chr17 (87823721-87823821) | |
| 111-231, gnl|tetNig1|chrUn_random (52031405-52031307) | |
| 589-938, gnl|bosTau2|chr13 (19818061-19817712) | |
| 589-938, gnl|Hg17|chr10 (17239792-17239443) | |
| 589-938, gnl|Mm7|chr2 (13459260-13458911) | |
| 1123-1351, gnl|bosTau2|chr13 (19809098-19808871) | |
| 1123-1351, gnl|Hg17|chr10 (17231146-17230914) | |
| 1123-1351, gnl|Mm7|chr2 (13450849-13450629) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-231, gnl|bosTau2|chr13 (19839508-19839387) | |
| 111-231, gnl|canFam2|chr2 (22568656-22568552) | |
| 111-231, gnl|dasNov1|scaffold_89265 (5895-5799) | |
| 111-231, gnl|echTel1|scaffold_101807 (1806-1910) | |
| 111-231, gnl|galGal2|chr2 (19130835-19130734) | |
| 111-231, gnl|hg17|chr10 (17256548-17256649) | |
| 111-231, gnl|Hg17|chr10 (17256667-17256549) | |
| 111-231, gnl|loxAfr1|scaffold_115700 (5685-5581) | |
| 111-231, gnl|mm7|chr2 (13472534-13472635) | |
| 111-231, gnl|Mm7|chr2 (13472653-13472533) | |
| 111-231, gnl|monDom2|scaffold_7 (52409193-52409089) | |
| 111-231, gnl|oryCun1|scaffold_196632 (8254-8155) | |
| 111-231, gnl|panTro1|chr8 (17784254-17784355) | |
| 111-231, gnl|rheMac2|chr9 (17466837-17466938) | |
| 111-231, gnl|rn3|chr17 (87823721-87823821) | |
| 111-231, gnl|tetNig1|chrUn_random (52031405-52031307) | |
| 589-938, gnl|bosTau2|chr13 (19818061-19817712) | |
| 589-938, gnl|Hg17|chr10 (17239792-17239443) | |
| 589-938, gnl|Mm7|chr2 (13459260-13458911) | |
| 1123-1351, gnl|bosTau2|chr13 (19809098-19808871) | |
| 1123-1351, gnl|Hg17|chr10 (17231146-17230914) | |
| 1123-1351, gnl|Mm7|chr2 (13450849-13450629) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fco (0.628832) | |
| isp (0.300752) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| lin (0.145603) | |
| spl (0.143184) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.628832) | |
| isp (0.300752) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| lin (0.145603) | |
| spl (0.143184) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ecc (0.115035) |