Non-Coding RNA Search

Ss1.1-Pig4-TMW8008G10.5

Sequence:


               
               CTCGGCGTCGCCTCTTCTGGGGCCGAGAGGAGTTGAGCAGCACAGTAGCTCTGGCAGGTG
GGGTGGGCGGAGGCGGGCCTGTTTGCCCGGGTTAGGAAATCGTCGCCTGGTCTGAGCCCC
ATCTGACCCGGGCCAGCGAGGGTCAGCGGCTCCTGCAGAGGCTACACACAGGCTACTGGA
ATAGTTTAACCCAGCAACCTTCCCCTTTATACCACAACAAATGTTCCTTCAACTCTGCCT
GCAAAATAAGTTGATACCTACAACTACACATTTTTGGTCTGAAGATACTAAACTAGGAAC
CTATGCTTTTCCCAACCTCCTCTCCCTCCCACCCCCACCAGAGTGGAATCCGCTGCAGAA
TCTCCAGCCTTAATTCTTGCTTCAGGACCCAGACCAGTGTCTTGCTCTAGGGCAGCCAAG
GGCAGAGGGGCCAGGTCTGCCCGTGTTTACCACTGTTGTCAAGCCACGGCCCTCTGGCCA
GTACCTGGCCATCCTCAGTGAGGTGGCCCGCCTCACCCCCCGCCCCAAGCTCCCATCACG
AAGAGGCCACCAGGCGCCCTTCCGGCTGCCCCTCCTCAGGCCCTGCCGCTGCTGCGCCCA
GGCAGCCTCGGGAAGCAGGCTCTCTGGGGAGCCCGGCCGCACCCAGGGCTGGCGGCCCGT
CCACTTCCTGACGGTAGAGCTGGGGGGGGTGGGGGGAGGGTTTGTTCCCCTGCAGTATCT
GTTCTGTGAAGTTTGTTAAATGTAAGGAAAGCTTAAATTCTTGTATCTTTAAAAGAGAAA
ATCTTATTTAACCCTTTTGTGTTCTAGATTTACTTACACACATAGCCTAGAGCTCAGTTT
TAGTTTTAACATTGTGAAAATATTAAAAGAATCTTGTAACTTTATTCTTTTTTCTCCTGC
TGAAAAAAATTAAACCAATCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGCGTCGCCTCTTCTGGGGCCGAGAGGAGTTGAGCAGCACAGTAGCTCTGGCAGGTG
GGGTGGGCGGAGGCGGGCCTGTTTGCCCGGGTTAGGAAATCGTCGCCTGGTCTGAGCCCC
ATCTGACCCGGGCCAGCGAGGGTCAGCGGCTCCTGCAGAGGCTACACACAGGCTACTGGA
ATAGTTTAACCCAGCAACCTTCCCCTTTATACCACAACAAATGTTCCTTCAACTCTGCCT
GCAAAATAAGTTGATACCTACAACTACACATTTTTGGTCTGAAGATACTAAACTAGGAAC
CTATGCTTTTCCCAACCTCCTCTCCCTCCCACCCCCACCAGAGTGGAATCCGCTGCAGAA
TCTCCAGCCTTAATTCTTGCTTCAGGACCCAGACCAGTGTCTTGCTCTAGGGCAGCCAAG
GGCAGAGGGGCCAGGTCTGCCCGTGTTTACCACTGTTGTCAAGCCACGGCCCTCTGGCCA
GTACCTGGCCATCCTCAGTGAGGTGGCCCGCCTCACCCCCCGCCCCAAGCTCCCATCACG
AAGAGGCCACCAGGCGCCCTTCCGGCTGCCCCTCCTCAGGCCCTGCCGCTGCTGCGCCCA
GGCAGCCTCGGGAAGCAGGCTCTCTGGGGAGCCCGGCCGCACCCAGGGCTGGCGGCCCGT
CCACTTCCTGACGGTAGAGCTGGGGGGGGTGGGGGGAGGGTTTGTTCCCCTGCAGTATCT
GTTCTGTGAAGTTTGTTAAATGTAAGGAAAGCTTAAATTCTTGTATCTTTAAAAGAGAAA
ATCTTATTTAACCCTTTTGTGTTCTAGATTTACTTACACACATAGCCTAGAGCTCAGTTT
TAGTTTTAACATTGTGAAAATATTAAAAGAATCTTGTAACTTTATTCTTTTTTCTCCTGC
TGAAAAAAATTAAACCAATCCTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-504, - strand, RNAz p=0.725353

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-504, - strand, RNAz p=0.725353

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               821-873, AJ012495 (gnl|overlapseqs|ASO1689), blast E-value=3e-23

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               821-873, AJ012495 (gnl|overlapseqs|ASO1689), blast E-value=3e-23

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               167-924, gnl|bosTau2|chr23 (11637052-11636298)
               

               
               167-924, gnl|Hg17|chr6 (38229621-38230374)
               

               
               167-924, gnl|Mm7|chr17 (28400596-28401271)
               


               
               527-909, gnl|bosTau2|chr15 (479663-479294)
               

               
               527-909, gnl|Hg17|chr6 (38229971-38230367)
               

               
               527-909, gnl|Mm7|chr17 (28400939-28401264)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-924, gnl|bosTau2|chr23 (11637052-11636298)
               

               
               167-924, gnl|Hg17|chr6 (38229621-38230374)
               

               
               167-924, gnl|Mm7|chr17 (28400596-28401271)
               


               
               527-909, gnl|bosTau2|chr15 (479663-479294)
               

               
               527-909, gnl|Hg17|chr6 (38229971-38230367)
               

               
               527-909, gnl|Mm7|chr17 (28400939-28401264)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	167-924, gnl\|bosTau2\|chr23 (11637052-11636298)
	167-924, gnl\|Hg17\|chr6 (38229621-38230374)
	167-924, gnl\|Mm7\|chr17 (28400596-28401271)

	527-909, gnl\|bosTau2\|chr15 (479663-479294)
	527-909, gnl\|Hg17\|chr6 (38229971-38230367)
	527-909, gnl\|Mm7\|chr17 (28400939-28401264)

	pla (0.267344)
	ecc (0.23007)
	nms (0.213858)
	fcc (0.197785)
	ton (0.1755)
	hyp (0.142837)
	lnt (0.142308)
	ute (0.132784)
	cov (0.132153)
	jca (0.11396)
	jej (0.0989218)