Ss1.1-Pig4-TMW8008J03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCAAAGAAGGTTTGAAAAATGAAAACATTAGCAAGACTTATTCTGGGATTTGTCAT CCTGGATGCTGCTGTGACTGCCCCAACTCTAGAGTCCATCAACTATGACTCTGAAACCTA CGATGCCACCTTAGAAGATCTGGATAATTTATACAACTATGAAAACATACCTATGGGTCC AGCTGAGATCGATGTTGCGACAGTGATGCCTTCTGGAAACAGAGAGCTCCTCACCCCGCC CCCACAGCCAGAGGAGGCTGAAGAGGAGGAGGAGGAGTCCACCCCCAGATTAATCGACGG CTCCTCCCCACAGGAGCCTGAATTCACTGGGGTTCTGGGCCCAAACACCAATGAAGACTT TCCAACCTGCCTTCTGTGTACCTGTATAAGTACCACCGTGTACTGTGACGACCATGAACT TGATGCTATTCCTCCTCTGCCCAAGACCACCGCTTATTTCTACTCCCGCTTTAACAGAAT TAAAAAGATCAACAAAAGTGATTTTGCAAACCTAAATGATCTAAGAAGGATTGATCTGAC ATCAAATTTAATATCCGAGATTGATGAAGATGCATTCCGAAAACTGCCTCAACTCCAAGA GCTTGTTCTTCGTGACAACAAGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCAAAGAAGGTTTGAAAAATGAAAACATTAGCAAGACTTATTCTGGGATTTGTCAT CCTGGATGCTGCTGTGACTGCCCCAACTCTAGAGTCCATCAACTATGACTCTGAAACCTA CGATGCCACCTTAGAAGATCTGGATAATTTATACAACTATGAAAACATACCTATGGGTCC AGCTGAGATCGATGTTGCGACAGTGATGCCTTCTGGAAACAGAGAGCTCCTCACCCCGCC CCCACAGCCAGAGGAGGCTGAAGAGGAGGAGGAGGAGTCCACCCCCAGATTAATCGACGG CTCCTCCCCACAGGAGCCTGAATTCACTGGGGTTCTGGGCCCAAACACCAATGAAGACTT TCCAACCTGCCTTCTGTGTACCTGTATAAGTACCACCGTGTACTGTGACGACCATGAACT TGATGCTATTCCTCCTCTGCCCAAGACCACCGCTTATTTCTACTCCCGCTTTAACAGAAT TAAAAAGATCAACAAAAGTGATTTTGCAAACCTAAATGATCTAAGAAGGATTGATCTGAC ATCAAATTTAATATCCGAGATTGATGAAGATGCATTCCGAAAACTGCCTCAACTCCAAGA GCTTGTTCTTCGTGACAACAAGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 15-187, gnl|bosTau2|chr5 (11529286-11529458) | |
| 15-187, gnl|canFam2|chr15 (34718171-34718296) | |
| 15-187, gnl|dasNov1|scaffold_7215 (21930-22055) | |
| 15-187, gnl|echTel1|scaffold_225475 (9543-9668) | |
| 15-187, gnl|galGal2|chr1 (40758613-40758741) | |
| 15-187, gnl|hg17|chr12 (89898632-89898756) | |
| 15-187, gnl|Hg17|chr12 (89898818-89898646) | |
| 15-187, gnl|loxAfr1|scaffold_48052 (15970-15845) | |
| 15-187, gnl|mm7|chr10 (97212367-97212243) | |
| 15-187, gnl|Mm7|chr10 (97212178-97212351) | |
| 15-187, gnl|monDom2|scaffold_34 (25735104-25734978) | |
| 15-187, gnl|oryCun1|scaffold_210372 (59099-58971) | |
| 15-187, gnl|panTro1|chr10 (92065387-92065511) | |
| 15-187, gnl|rheMac2|chr11 (92202342-92202466) | |
| 15-187, gnl|rn3|chr7 (35187366-35187242) | |
| 15-187, gnl|xenTro1|scaffold_237 (167724-167606) | |
| 355-515, gnl|bosTau2|chr5 (13815824-13815664) | |
| 355-515, gnl|canFam2|chr15 (34691734-34691911) | |
| 355-515, gnl|danRer3|chr4 (17885406-17885583) | |
| 355-515, gnl|dasNov1|scaffold_9743 (9291-9466) | |
| 355-515, gnl|echTel1|scaffold_251876 (1451-1288) | |
| 355-515, gnl|fr1|chrUn (90859230-90859405) | |
| 355-515, gnl|galGal2|chr1 (40743238-40743420) | |
| 355-515, gnl|hg17|chr12 (89869063-89869240) | |
| 355-515, gnl|Hg17|chr12 (89869227-89869067) | |
| 355-515, gnl|loxAfr1|scaffold_38774 (2975-2798) | |
| 355-515, gnl|mm7|chr10 (97237328-97237151) | |
| 355-515, gnl|Mm7|chr10 (97237162-97237322) | |
| 355-515, gnl|monDom2|scaffold_34 (25761924-25761734) | |
| 355-515, gnl|oryCun1|scaffold_124132 (4210-4033) | |
| 355-515, gnl|panTro1|chr10 (92035417-92035594) | |
| 355-515, gnl|rheMac2|chr11 (92164434-92164611) | |
| 355-515, gnl|rn3|chr7 (35208185-35208005) | |
| 355-515, gnl|tetNig1|chr19 (1826737-1826901) | |
| 355-515, gnl|xenTro1|scaffold_237 (197882-197696) | |
| 516-624, gnl|bosTau2|chr5 (13814366-13814258) | |
| 516-624, gnl|canFam2|chr15 (34690484-34690758) | |
| 516-624, gnl|danRer3|chr4 (17884759-17885020) | |
| 516-624, gnl|dasNov1|scaffold_9743 (6086-6338) | |
| 516-624, gnl|echTel1|scaffold_251876 (2643-2401) | |
| 516-624, gnl|fr1|chrUn (90858838-90859060) | |
| 516-624, gnl|galGal2|chr1 (40741866-40742098) | |
| 516-624, gnl|hg17|chr12 (89868037-89868306) | |
| 516-624, gnl|Hg17|chr12 (89868247-89868139) | |
| 516-624, gnl|loxAfr1|scaffold_38774 (4264-3990) | |
| 516-624, gnl|mm7|chr10 (97238345-97238070) | |
| 516-624, gnl|Mm7|chr10 (97238133-97238241) | |
| 516-624, gnl|monDom2|scaffold_34 (25763603-25763330) | |
| 516-624, gnl|oryCun1|scaffold_208483 (15363-15094) | |
| 516-624, gnl|panTro1|chr10 (92033762-92034031) | |
| 516-624, gnl|rheMac2|chr11 (92163422-92163691) | |
| 516-624, gnl|rn3|chr7 (35209191-35208919) | |
| 516-624, gnl|xenTro1|scaffold_237 (198614-198357) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-187, gnl|bosTau2|chr5 (11529286-11529458) | |
| 15-187, gnl|canFam2|chr15 (34718171-34718296) | |
| 15-187, gnl|dasNov1|scaffold_7215 (21930-22055) | |
| 15-187, gnl|echTel1|scaffold_225475 (9543-9668) | |
| 15-187, gnl|galGal2|chr1 (40758613-40758741) | |
| 15-187, gnl|hg17|chr12 (89898632-89898756) | |
| 15-187, gnl|Hg17|chr12 (89898818-89898646) | |
| 15-187, gnl|loxAfr1|scaffold_48052 (15970-15845) | |
| 15-187, gnl|mm7|chr10 (97212367-97212243) | |
| 15-187, gnl|Mm7|chr10 (97212178-97212351) | |
| 15-187, gnl|monDom2|scaffold_34 (25735104-25734978) | |
| 15-187, gnl|oryCun1|scaffold_210372 (59099-58971) | |
| 15-187, gnl|panTro1|chr10 (92065387-92065511) | |
| 15-187, gnl|rheMac2|chr11 (92202342-92202466) | |
| 15-187, gnl|rn3|chr7 (35187366-35187242) | |
| 15-187, gnl|xenTro1|scaffold_237 (167724-167606) | |
| 355-515, gnl|bosTau2|chr5 (13815824-13815664) | |
| 355-515, gnl|canFam2|chr15 (34691734-34691911) | |
| 355-515, gnl|danRer3|chr4 (17885406-17885583) | |
| 355-515, gnl|dasNov1|scaffold_9743 (9291-9466) | |
| 355-515, gnl|echTel1|scaffold_251876 (1451-1288) | |
| 355-515, gnl|fr1|chrUn (90859230-90859405) | |
| 355-515, gnl|galGal2|chr1 (40743238-40743420) | |
| 355-515, gnl|hg17|chr12 (89869063-89869240) | |
| 355-515, gnl|Hg17|chr12 (89869227-89869067) | |
| 355-515, gnl|loxAfr1|scaffold_38774 (2975-2798) | |
| 355-515, gnl|mm7|chr10 (97237328-97237151) | |
| 355-515, gnl|Mm7|chr10 (97237162-97237322) | |
| 355-515, gnl|monDom2|scaffold_34 (25761924-25761734) | |
| 355-515, gnl|oryCun1|scaffold_124132 (4210-4033) | |
| 355-515, gnl|panTro1|chr10 (92035417-92035594) | |
| 355-515, gnl|rheMac2|chr11 (92164434-92164611) | |
| 355-515, gnl|rn3|chr7 (35208185-35208005) | |
| 355-515, gnl|tetNig1|chr19 (1826737-1826901) | |
| 355-515, gnl|xenTro1|scaffold_237 (197882-197696) | |
| 516-624, gnl|bosTau2|chr5 (13814366-13814258) | |
| 516-624, gnl|canFam2|chr15 (34690484-34690758) | |
| 516-624, gnl|danRer3|chr4 (17884759-17885020) | |
| 516-624, gnl|dasNov1|scaffold_9743 (6086-6338) | |
| 516-624, gnl|echTel1|scaffold_251876 (2643-2401) | |
| 516-624, gnl|fr1|chrUn (90858838-90859060) | |
| 516-624, gnl|galGal2|chr1 (40741866-40742098) | |
| 516-624, gnl|hg17|chr12 (89868037-89868306) | |
| 516-624, gnl|Hg17|chr12 (89868247-89868139) | |
| 516-624, gnl|loxAfr1|scaffold_38774 (4264-3990) | |
| 516-624, gnl|mm7|chr10 (97238345-97238070) | |
| 516-624, gnl|Mm7|chr10 (97238133-97238241) | |
| 516-624, gnl|monDom2|scaffold_34 (25763603-25763330) | |
| 516-624, gnl|oryCun1|scaffold_208483 (15363-15094) | |
| 516-624, gnl|panTro1|chr10 (92033762-92034031) | |
| 516-624, gnl|rheMac2|chr11 (92163422-92163691) | |
| 516-624, gnl|rn3|chr7 (35209191-35208919) | |
| 516-624, gnl|xenTro1|scaffold_237 (198614-198357) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |