Non-Coding RNA Search

Ss1.1-Pig4-TMW8008J04.5

Sequence:


               
               GCCATGGCCCAGAGGAACCAGGACCTACCCCCCGAAGGCCGCAGCAAGGACACTTTTAAA
GAAGGGACTTCTGCTATAAATCCCAGCAATGGCCCAGGCCATGAGCACAGCAGCCACCCT
TGGGTAGAGACACCAGAGGACACCTCTCAGGACACTAACAATGGTGGCTCTGTAGAACAC
TCTTTTGAAACCAAGAAGCTCAATGGAAAGGCTCTAAGCAAGGCCCTGAGCAGCCGGGCC
GAGGAGCCAGCCTCCCCTCCTGTCCCCAAGGCATCAGGCTCCACTCTCAACAGCGGGTCT
GGCAACTGTCTCAGGACCCAGTCTGATGACAGTGAGGAGAGGAGCCTTGAAACCATCTGT
GCCAACCACAACAATGGACGCTTACACCCCCGTCCCCCTCACCCCCACAGCAATGGGCAG
AACTTCGGGGAGCTGGAGGCGGTGGCCTGCTCTTCCCCAGGCTGTTCGGACACTGACCAT
GATAATTTGTCCCTGACAGGGATACTCCTACACAAAGATTGTTGTGGGTCCGAAATAGCC
TGTGAGACCCCCAGTGCTGCCACGAGAGAGGACCCCACTGACCCCCCAGACACAGACAGC
AGCAGGGCTGTTCATGGCCATAGTGGCCTCAAAAGGCACCGAATTGAATTAGAAGATACA
GATTCGGAGAATTCCTCCTCAGAGAAGAAATTAAAAACATGATAAATACAAAGGGAAAAC
AAAAAGCTATGAAAAGTAGCTTTACATAAATTTTTAAATCCTGTTTAGTGAACACAGAGG
AAAGGAAAAATAGTATTAAAGGCACATAAAAACCAGGGCCTGAAATTTTGTGTCTGATGC
TGCTCCCTTCTGTTCAACAATGGGTCTGATGTCTAGCTGGCCGTTGGCCGTGCTGTGTTA
AGAAAGGGAAAAAAAAAATCCAAGTGACTCCTTTCTAGTAAGACTTGAGCATAGTGTATC
TGTGCAGATTCTGTAAAAGTAAATCCTTGTTGAGATGTTTGACTTGTTCTTATGTGTGTG
CACTGGCACGCGTGAGCTCACCGTCTCAGACTTTTCTTTCCATTTGCCATCAGAATGGAT
CTGTGGATCTGTATTTTTTGCCATCTCACCTTGTTTACATGCCATAGGTGTTCTGGTCTT
AAGGATGAGTGTACTGAATCAGGTTGTGCTGCCAGTGAGTAGTGGATTTATGCCAAAAGA
ATGGAGAGGGGAATGGAAACAGGCCTTCAGCCCACTGGCTGTGCTGGGAAGGAAAGTGTG
GTTCCTTTTCTAAAGAAATCACCCATGTTTTCTCAGTAGCACTTCTTCATGGAGCATTTG
ATGTAGACATACTAAAAGTGGAGCATTTTTAATGCTACTGAGAGGTTAGCACTTAAGATC
AGATTCAAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATGGCCCAGAGGAACCAGGACCTACCCCCCGAAGGCCGCAGCAAGGACACTTTTAAA
GAAGGGACTTCTGCTATAAATCCCAGCAATGGCCCAGGCCATGAGCACAGCAGCCACCCT
TGGGTAGAGACACCAGAGGACACCTCTCAGGACACTAACAATGGTGGCTCTGTAGAACAC
TCTTTTGAAACCAAGAAGCTCAATGGAAAGGCTCTAAGCAAGGCCCTGAGCAGCCGGGCC
GAGGAGCCAGCCTCCCCTCCTGTCCCCAAGGCATCAGGCTCCACTCTCAACAGCGGGTCT
GGCAACTGTCTCAGGACCCAGTCTGATGACAGTGAGGAGAGGAGCCTTGAAACCATCTGT
GCCAACCACAACAATGGACGCTTACACCCCCGTCCCCCTCACCCCCACAGCAATGGGCAG
AACTTCGGGGAGCTGGAGGCGGTGGCCTGCTCTTCCCCAGGCTGTTCGGACACTGACCAT
GATAATTTGTCCCTGACAGGGATACTCCTACACAAAGATTGTTGTGGGTCCGAAATAGCC
TGTGAGACCCCCAGTGCTGCCACGAGAGAGGACCCCACTGACCCCCCAGACACAGACAGC
AGCAGGGCTGTTCATGGCCATAGTGGCCTCAAAAGGCACCGAATTGAATTAGAAGATACA
GATTCGGAGAATTCCTCCTCAGAGAAGAAATTAAAAACATGATAAATACAAAGGGAAAAC
AAAAAGCTATGAAAAGTAGCTTTACATAAATTTTTAAATCCTGTTTAGTGAACACAGAGG
AAAGGAAAAATAGTATTAAAGGCACATAAAAACCAGGGCCTGAAATTTTGTGTCTGATGC
TGCTCCCTTCTGTTCAACAATGGGTCTGATGTCTAGCTGGCCGTTGGCCGTGCTGTGTTA
AGAAAGGGAAAAAAAAAATCCAAGTGACTCCTTTCTAGTAAGACTTGAGCATAGTGTATC
TGTGCAGATTCTGTAAAAGTAAATCCTTGTTGAGATGTTTGACTTGTTCTTATGTGTGTG
CACTGGCACGCGTGAGCTCACCGTCTCAGACTTTTCTTTCCATTTGCCATCAGAATGGAT
CTGTGGATCTGTATTTTTTGCCATCTCACCTTGTTTACATGCCATAGGTGTTCTGGTCTT
AAGGATGAGTGTACTGAATCAGGTTGTGCTGCCAGTGAGTAGTGGATTTATGCCAAAAGA
ATGGAGAGGGGAATGGAAACAGGCCTTCAGCCCACTGGCTGTGCTGGGAAGGAAAGTGTG
GTTCCTTTTCTAAAGAAATCACCCATGTTTTCTCAGTAGCACTTCTTCATGGAGCATTTG
ATGTAGACATACTAAAAGTGGAGCATTTTTAATGCTACTGAGAGGTTAGCACTTAAGATC
AGATTCAAGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8NCX5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NCX5_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               7-206, - strand, RNAz p=0.976683
               

               
               247-366, - strand, RNAz p=0.837136
               

               
               527-646, - strand, RNAz p=0.533057
               

               
               1220-1333, + strand, RNAz p=0.585633

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-206, - strand, RNAz p=0.976683
               

               
               247-366, - strand, RNAz p=0.837136
               

               
               527-646, - strand, RNAz p=0.533057
               

               
               1220-1333, + strand, RNAz p=0.585633

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1392, gnl|bosTau2|chr10 (55352141-55350763)
               

               
               7-1392, gnl|Hg17|chr14 (68591007-68589626)
               

               
               7-1392, gnl|Mm7|chr12 (78301992-78300626)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1392, gnl|bosTau2|chr10 (55352141-55350763)
               

               
               7-1392, gnl|Hg17|chr14 (68591007-68589626)
               

               
               7-1392, gnl|Mm7|chr12 (78301992-78300626)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (0.58548)
               

               
               amn (0.417711)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               ste (0.135208)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               amn (0.417711)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               ste (0.135208)

	7-206, - strand, RNAz p=0.976683
	247-366, - strand, RNAz p=0.837136
	527-646, - strand, RNAz p=0.533057
	1220-1333, + strand, RNAz p=0.585633

	7-1392, gnl\|bosTau2\|chr10 (55352141-55350763)
	7-1392, gnl\|Hg17\|chr14 (68591007-68589626)
	7-1392, gnl\|Mm7\|chr12 (78301992-78300626)

	cte (0.58548)
	amn (0.417711)
	cki (0.165235)
	spl (0.143184)
	ste (0.135208)