Ss1.1-Pig4-TMW8008K11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGTTTTCTGCTTCAACATGGAATTCCACTCCGCGAGGCAGGCGGTACTGCAGCTGCTT AATACGGTGGCTCCGGCGGACCTCCCAGCGCTGCTTCAGTGGATGCGAACTACCCGAGAT TTTGATGAATTCACTCAAGACAATAATGATATTATGTTGAAAAATATAGCAGAAGACCTT CGAAATTGCTTACCTCTAGAAACCATGCTTTCCTCTGAACAGCTTGCCCTCCAAAAAATA CAGCAGCAGCCAGAACCCACAGTTCACGTTGATGCATTCCTTTATGATGAAGACTTTATT GATTCATTATGTGAGCAAGGAAAAATGAGCAGAAACTACTGTATGGTGTGCGGCTCACAC CAGACAGCGCCCTTAGGGTTTATTTCTCATTCCTTCTCTCTCATGGAATTGAAGTTCATT TATCATCACGTGCTCCCTGATCTGTCGGGAAAGGTCTTGGTTGACGTTGGCTCCAGGCTT GGCACCGTCCTTTATGGGGGTTATCTTTACAGTTCAGCATCACAGCTATTTGGAGTGGAA TTGAATGGAGACTTTTGCCAGTTGCAGGATATGATCATAAAAAAGTACCAGTTCACTGAC AGAATAAAGGTTCTTCATGCAGACATCTGTACACAAGATTCACTTCTTCAAAATGCTGAT GTTACTGTAATGAATAATGTCTTTGAATATTTTCTTAATGAGACAGAACAGGCCAGAGCC TGGGAGTATATCAGCCATAATGTAAGGAAACAAGGATCGTTACTAGTGACAGTGCCAAGT CTTGAAGAGTCTCTCTCAGGTCTTCAGGTTAATATACAGTTATCTTCCTGGGTTGAAGAG ATACCACTGAACTATGATGTATAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGTTTTCTGCTTCAACATGGAATTCCACTCCGCGAGGCAGGCGGTACTGCAGCTGCTT AATACGGTGGCTCCGGCGGACCTCCCAGCGCTGCTTCAGTGGATGCGAACTACCCGAGAT TTTGATGAATTCACTCAAGACAATAATGATATTATGTTGAAAAATATAGCAGAAGACCTT CGAAATTGCTTACCTCTAGAAACCATGCTTTCCTCTGAACAGCTTGCCCTCCAAAAAATA CAGCAGCAGCCAGAACCCACAGTTCACGTTGATGCATTCCTTTATGATGAAGACTTTATT GATTCATTATGTGAGCAAGGAAAAATGAGCAGAAACTACTGTATGGTGTGCGGCTCACAC CAGACAGCGCCCTTAGGGTTTATTTCTCATTCCTTCTCTCTCATGGAATTGAAGTTCATT TATCATCACGTGCTCCCTGATCTGTCGGGAAAGGTCTTGGTTGACGTTGGCTCCAGGCTT GGCACCGTCCTTTATGGGGGTTATCTTTACAGTTCAGCATCACAGCTATTTGGAGTGGAA TTGAATGGAGACTTTTGCCAGTTGCAGGATATGATCATAAAAAAGTACCAGTTCACTGAC AGAATAAAGGTTCTTCATGCAGACATCTGTACACAAGATTCACTTCTTCAAAATGCTGAT GTTACTGTAATGAATAATGTCTTTGAATATTTTCTTAATGAGACAGAACAGGCCAGAGCC TGGGAGTATATCAGCCATAATGTAAGGAAACAAGGATCGTTACTAGTGACAGTGCCAAGT CTTGAAGAGTCTCTCTCAGGTCTTCAGGTTAATATACAGTTATCTTCCTGGGTTGAAGAG ATACCACTGAACTATGATGTATAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 12-116, gnl|bosTau2|chr21 (29765303-29765199) | |
| 12-116, gnl|canFam2|chr8 (16804391-16805085) | |
| 12-116, gnl|echTel1|scaffold_284756 (52250-51581) | |
| 12-116, gnl|hg17|chr14 (34521351-34522038) | |
| 12-116, gnl|Hg17|chr14 (34521496-34521380) | |
| 12-116, gnl|loxAfr1|scaffold_102790 (1551-2215) | |
| 12-116, gnl|mm7|chr12 (53048303-53048954) | |
| 12-116, gnl|Mm7|chr12 (53048436-53048332) | |
| 12-116, gnl|oryCun1|scaffold_166066 (6111-6751) | |
| 12-116, gnl|panTro1|chr15 (33676547-33677234) | |
| 12-116, gnl|rheMac2|chr7 (97942259-97942942) | |
| 12-116, gnl|rn3|chr6 (75449377-75450041) | |
| 230-377, gnl|bosTau2|chr21 (29748379-29748232) | |
| 230-377, gnl|canFam2|chr8 (16787243-16787428) | |
| 230-377, gnl|canFam2|chr8 (16787253-16787391) | |
| 230-377, gnl|danRer3|chr17 (5568544-5568728) | |
| 230-377, gnl|dasNov1|scaffold_48108 (44056-44241) | |
| 230-377, gnl|dasNov1|scaffold_48108 (44066-44205) | |
| 230-377, gnl|echTel1|scaffold_282601 (50003-50188) | |
| 230-377, gnl|echTel1|scaffold_313641 (189677-189814) | |
| 230-377, gnl|hg17|chr11 (67176809-67176940) | |
| 230-377, gnl|hg17|chr14 (34508118-34508299) | |
| 230-377, gnl|Hg17|chr14 (34508272-34508126) | |
| 230-377, gnl|loxAfr1|scaffold_5251 (50729-50910) | |
| 230-377, gnl|loxAfr1|scaffold_5251 (50739-50877) | |
| 230-377, gnl|mm7|chr12 (53029398-53029573) | |
| 230-377, gnl|mm7|chr12 (53029408-53029543) | |
| 230-377, gnl|Mm7|chr12 (53029548-53029406) | |
| 230-377, gnl|monDom2|scaffold_73 (3352321-3352143) | |
| 230-377, gnl|oryCun1|scaffold_177087 (24370-24552) | |
| 230-377, gnl|oryCun1|scaffold_177087 (24380-24515) | |
| 230-377, gnl|panTro1|chr15 (33663263-33663444) | |
| 230-377, gnl|panTro1|chr9 (68438235-68438366) | |
| 230-377, gnl|rheMac2|chr14 (6804345-6804214) | |
| 230-377, gnl|rheMac2|chr7 (97928406-97928587) | |
| 230-377, gnl|rn3|chr6 (75421846-75422023) | |
| 230-377, gnl|rn3|chr6 (75421856-75421991) | |
| 608-716, gnl|bosTau2|chr21 (29742380-29742272) | |
| 608-716, gnl|canFam2|chr8 (16775987-16776162) | |
| 608-716, gnl|canFam2|chr8 (16776053-16776157) | |
| 608-716, gnl|danRer3|chr17 (5563980-5564152) | |
| 608-716, gnl|dasNov1|scaffold_48108 (35545-35722) | |
| 608-716, gnl|dasNov1|scaffold_48108 (35613-35717) | |
| 608-716, gnl|echTel1|scaffold_282601 (41421-41587) | |
| 608-716, gnl|echTel1|scaffold_313641 (189351-189442) | |
| 608-716, gnl|hg17|chr11 (67176474-67176577) | |
| 608-716, gnl|hg17|chr14 (34493748-34493915) | |
| 608-716, gnl|Hg17|chr14 (34493913-34493816) | |
| 608-716, gnl|loxAfr1|scaffold_5251 (42314-42493) | |
| 608-716, gnl|loxAfr1|scaffold_5251 (42384-42488) | |
| 608-716, gnl|mm7|chr12 (53021583-53021762) | |
| 608-716, gnl|mm7|chr12 (53021654-53021758) | |
| 608-716, gnl|Mm7|chr12 (53021761-53021653) | |
| 608-716, gnl|oryCun1|scaffold_177087 (14465-14641) | |
| 608-716, gnl|oryCun1|scaffold_177087 (14532-14636) | |
| 608-716, gnl|panTro1|chr15 (33648843-33649010) | |
| 608-716, gnl|panTro1|chr9 (68437900-68438003) | |
| 608-716, gnl|rheMac2|chr14 (6804681-6804578) | |
| 608-716, gnl|rheMac2|chr7 (97911158-97911331) | |
| 608-716, gnl|rn3|chr6 (75412216-75412398) | |
| 608-716, gnl|rn3|chr6 (75412290-75412394) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-116, gnl|bosTau2|chr21 (29765303-29765199) | |
| 12-116, gnl|canFam2|chr8 (16804391-16805085) | |
| 12-116, gnl|echTel1|scaffold_284756 (52250-51581) | |
| 12-116, gnl|hg17|chr14 (34521351-34522038) | |
| 12-116, gnl|Hg17|chr14 (34521496-34521380) | |
| 12-116, gnl|loxAfr1|scaffold_102790 (1551-2215) | |
| 12-116, gnl|mm7|chr12 (53048303-53048954) | |
| 12-116, gnl|Mm7|chr12 (53048436-53048332) | |
| 12-116, gnl|oryCun1|scaffold_166066 (6111-6751) | |
| 12-116, gnl|panTro1|chr15 (33676547-33677234) | |
| 12-116, gnl|rheMac2|chr7 (97942259-97942942) | |
| 12-116, gnl|rn3|chr6 (75449377-75450041) | |
| 230-377, gnl|bosTau2|chr21 (29748379-29748232) | |
| 230-377, gnl|canFam2|chr8 (16787243-16787428) | |
| 230-377, gnl|canFam2|chr8 (16787253-16787391) | |
| 230-377, gnl|danRer3|chr17 (5568544-5568728) | |
| 230-377, gnl|dasNov1|scaffold_48108 (44056-44241) | |
| 230-377, gnl|dasNov1|scaffold_48108 (44066-44205) | |
| 230-377, gnl|echTel1|scaffold_282601 (50003-50188) | |
| 230-377, gnl|echTel1|scaffold_313641 (189677-189814) | |
| 230-377, gnl|hg17|chr11 (67176809-67176940) | |
| 230-377, gnl|hg17|chr14 (34508118-34508299) | |
| 230-377, gnl|Hg17|chr14 (34508272-34508126) | |
| 230-377, gnl|loxAfr1|scaffold_5251 (50729-50910) | |
| 230-377, gnl|loxAfr1|scaffold_5251 (50739-50877) | |
| 230-377, gnl|mm7|chr12 (53029398-53029573) | |
| 230-377, gnl|mm7|chr12 (53029408-53029543) | |
| 230-377, gnl|Mm7|chr12 (53029548-53029406) | |
| 230-377, gnl|monDom2|scaffold_73 (3352321-3352143) | |
| 230-377, gnl|oryCun1|scaffold_177087 (24370-24552) | |
| 230-377, gnl|oryCun1|scaffold_177087 (24380-24515) | |
| 230-377, gnl|panTro1|chr15 (33663263-33663444) | |
| 230-377, gnl|panTro1|chr9 (68438235-68438366) | |
| 230-377, gnl|rheMac2|chr14 (6804345-6804214) | |
| 230-377, gnl|rheMac2|chr7 (97928406-97928587) | |
| 230-377, gnl|rn3|chr6 (75421846-75422023) | |
| 230-377, gnl|rn3|chr6 (75421856-75421991) | |
| 608-716, gnl|bosTau2|chr21 (29742380-29742272) | |
| 608-716, gnl|canFam2|chr8 (16775987-16776162) | |
| 608-716, gnl|canFam2|chr8 (16776053-16776157) | |
| 608-716, gnl|danRer3|chr17 (5563980-5564152) | |
| 608-716, gnl|dasNov1|scaffold_48108 (35545-35722) | |
| 608-716, gnl|dasNov1|scaffold_48108 (35613-35717) | |
| 608-716, gnl|echTel1|scaffold_282601 (41421-41587) | |
| 608-716, gnl|echTel1|scaffold_313641 (189351-189442) | |
| 608-716, gnl|hg17|chr11 (67176474-67176577) | |
| 608-716, gnl|hg17|chr14 (34493748-34493915) | |
| 608-716, gnl|Hg17|chr14 (34493913-34493816) | |
| 608-716, gnl|loxAfr1|scaffold_5251 (42314-42493) | |
| 608-716, gnl|loxAfr1|scaffold_5251 (42384-42488) | |
| 608-716, gnl|mm7|chr12 (53021583-53021762) | |
| 608-716, gnl|mm7|chr12 (53021654-53021758) | |
| 608-716, gnl|Mm7|chr12 (53021761-53021653) | |
| 608-716, gnl|oryCun1|scaffold_177087 (14465-14641) | |
| 608-716, gnl|oryCun1|scaffold_177087 (14532-14636) | |
| 608-716, gnl|panTro1|chr15 (33648843-33649010) | |
| 608-716, gnl|panTro1|chr9 (68437900-68438003) | |
| 608-716, gnl|rheMac2|chr14 (6804681-6804578) | |
| 608-716, gnl|rheMac2|chr7 (97911158-97911331) | |
| 608-716, gnl|rn3|chr6 (75412216-75412398) | |
| 608-716, gnl|rn3|chr6 (75412290-75412394) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fat (0.147427) | |
| pty (0.142714) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| nlu (0.191681) | |
| fat (0.147427) | |
| pty (0.142714) | |
| ret (0.128733) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| jej (0.0989218) |