Non-Coding RNA Search

Ss1.1-Pig4-TMW8008M13.5

Sequence:


               
               CGAGGACTTGCGGCTGCGCAGCGCCCCGGTGCTCGTGCCTGCTGTCGTGCTGCGCCGGAC
CCCGGCCTGTGCGGGCGGCCGCGCCGTCTACACCGAGGAGTATGTCACGGTCCCCGTGGG
CTGCACCTGCGTCCCCCAGCAGCAGCAGCAAGAGGCGGGCGGCGTCCCCTCCGGCCTGGA
CAAGCAGGCCCGGCCCTGAGGCCACCCGGGCCCGCGGAGCCTCAGAGGCGGGATGCACGG
GACGGTGCAACCGACAAGAACCAAGTGCTGTGTTTTTGCGGCCCCTTGGGGCGCCCCACT
CCCCGCGGCGGGGCGGTGGGTGAAGACAGCCGGGACATGTCGGGGCACCAGGGCCCCACA
AGGCAGATGACAGGGGCTTTAAAAATCTTGTTTAAAGTAGAATATATACTTTTTTTTTAA
GCCATTTTCACTAGGGGCAGAAAATATTTTTATATTCGCCACTTGAGCAGGTCTATCAGC
CATTTTTTCCTTGACATATGACCCTTTTATCAACCCTGAGCTGCACTTCCTCTGTCAGAA
TTTTTGGAGGCGCAGCGGAGGTCCCAGCCCCTCTGGCTGGCCTGTGGCCTGGGTCCCTGA
ATGGACCCCGCCCTGCCCCAGACGGCGCTCAGGCTCGGCTACCCCAGGGCCCGGCACCTG
GTTTATCCGTGAGGATGGAAACGGCCGCAGGTCTGCACAGACTTTTCTTTCCATTTTTTA
GGGGCCGATTTGTGGGCAAGAGGTGGTGAGATCTGGGCCAGCTCCCAGGCAGAACCCAAA
TCTTGGCTTACTAGCCAAGTTTGAGGAGAAGTGGGCATACCTAACTTCTGCAGAAGTGGC
GCGTGGCAGCCTCTCTCTGTCCTGAGCAGGAGCTGAGTCCTTAAGCCTAAAGGAGTAGGT
CTGACCCTGAAGGCAGAGTTCTTTGCTAGGCTGAGTCCTGAGCGCACTTCGCAGTCACTG
AATGAGTGGAGTGAAGGGCGCAGGCTGAGCGCATCTCTAACTCTGCTTTGAGGGACTCAG
TTTTTAGAGGAAACGCCCTTCCTATTAAGGTCACACTTCCGATCTGGTTGGGCCTTGGGA
CCGTCAGCCTCTCTGCATCTGTTGACAGGCTCCTGCCTCTGATACCCTTGGCCTTGGTTT
AATCTGGACGGAAGGCTTACGAGAGCTTTCAACTTGTACACAATACTGACAGAGGTTGTG
CAAGGAAAAACATCCCCGAGCAAAATTCAGGTTTTCCAAATAAAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGACTTGCGGCTGCGCAGCGCCCCGGTGCTCGTGCCTGCTGTCGTGCTGCGCCGGAC
CCCGGCCTGTGCGGGCGGCCGCGCCGTCTACACCGAGGAGTATGTCACGGTCCCCGTGGG
CTGCACCTGCGTCCCCCAGCAGCAGCAGCAAGAGGCGGGCGGCGTCCCCTCCGGCCTGGA
CAAGCAGGCCCGGCCCTGAGGCCACCCGGGCCCGCGGAGCCTCAGAGGCGGGATGCACGG
GACGGTGCAACCGACAAGAACCAAGTGCTGTGTTTTTGCGGCCCCTTGGGGCGCCCCACT
CCCCGCGGCGGGGCGGTGGGTGAAGACAGCCGGGACATGTCGGGGCACCAGGGCCCCACA
AGGCAGATGACAGGGGCTTTAAAAATCTTGTTTAAAGTAGAATATATACTTTTTTTTTAA
GCCATTTTCACTAGGGGCAGAAAATATTTTTATATTCGCCACTTGAGCAGGTCTATCAGC
CATTTTTTCCTTGACATATGACCCTTTTATCAACCCTGAGCTGCACTTCCTCTGTCAGAA
TTTTTGGAGGCGCAGCGGAGGTCCCAGCCCCTCTGGCTGGCCTGTGGCCTGGGTCCCTGA
ATGGACCCCGCCCTGCCCCAGACGGCGCTCAGGCTCGGCTACCCCAGGGCCCGGCACCTG
GTTTATCCGTGAGGATGGAAACGGCCGCAGGTCTGCACAGACTTTTCTTTCCATTTTTTA
GGGGCCGATTTGTGGGCAAGAGGTGGTGAGATCTGGGCCAGCTCCCAGGCAGAACCCAAA
TCTTGGCTTACTAGCCAAGTTTGAGGAGAAGTGGGCATACCTAACTTCTGCAGAAGTGGC
GCGTGGCAGCCTCTCTCTGTCCTGAGCAGGAGCTGAGTCCTTAAGCCTAAAGGAGTAGGT
CTGACCCTGAAGGCAGAGTTCTTTGCTAGGCTGAGTCCTGAGCGCACTTCGCAGTCACTG
AATGAGTGGAGTGAAGGGCGCAGGCTGAGCGCATCTCTAACTCTGCTTTGAGGGACTCAG
TTTTTAGAGGAAACGCCCTTCCTATTAAGGTCACACTTCCGATCTGGTTGGGCCTTGGGA
CCGTCAGCCTCTCTGCATCTGTTGACAGGCTCCTGCCTCTGATACCCTTGGCCTTGGTTT
AATCTGGACGGAAGGCTTACGAGAGCTTTCAACTTGTACACAATACTGACAGAGGTTGTG
CAAGGAAAAACATCCCCGAGCAAAATTCAGGTTTTCCAAATAAAACAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50731239|ref|XP_425640.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50731239|ref|XP_425640.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               2-217, gnl|bosTau2|chr12 (19848800-19848586)
               

               
               2-217, gnl|Hg17|chr13 (20193863-20194093)
               

               
               2-217, gnl|Mm7|chr14 (52410343-52410561)
               


               
               971-1245, gnl|bosTau2|chr12 (19847851-19847569)
               

               
               971-1245, gnl|Hg17|chr13 (20195230-20195612)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-217, gnl|bosTau2|chr12 (19848800-19848586)
               

               
               2-217, gnl|Hg17|chr13 (20193863-20194093)
               

               
               2-217, gnl|Mm7|chr14 (52410343-52410561)
               


               
               971-1245, gnl|bosTau2|chr12 (19847851-19847569)
               

               
               971-1245, gnl|Hg17|chr13 (20195230-20195612)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               eep (0.245128)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               ldo (0.0970026)

	2-217, gnl\|bosTau2\|chr12 (19848800-19848586)
	2-217, gnl\|Hg17\|chr13 (20193863-20194093)
	2-217, gnl\|Mm7\|chr14 (52410343-52410561)

	971-1245, gnl\|bosTau2\|chr12 (19847851-19847569)
	971-1245, gnl\|Hg17\|chr13 (20195230-20195612)