Non-Coding RNA Search

Ss1.1-Pig4-TMW8009B16.5

Sequence:


               
               AAATTTCTCCATAAAATAAACCTTCAAGAAAAAGAAACAAAGCCTTTATCCCTCCAAAGG
AACATTTGGCTAGCAGACAGGAATCAAGACGTTAGGCTTATGGTGGATGAGCTTTGGCAC
GTGCCACCCTAATCCTAGCCAGTGTTCCGTGGTTGCCTTCCTTTCTGTCACATGCCAGAT
AGAAAATTCATCTCTTACGTCTGCTTTACGAAGCAAGCCAAGCACATCTTGCTGAATTAT
TTCTTCGTCATGAATAGCCTTAACATTAATTTTGTATTCATATGTACTGAGGGTCTTCAT
GAACTTTATACTCTAAATTCCACTGAATTGGGCCTGCCTCATTTTTCTTGGCTTCCTCCA
AACTTTCCTTTTTATTACCATTCACATTCTTTGTACTTTGACATTTTGTTCATTAAGTTC
ATCTCTCCCTATAGAATCTCACCCTATTGCATGGTTTCCATTTTATTTTTCACGTCTTAA
CACATTGTGAAGAGTTTTCTGTGCAAAGCAAAACCAAAATTTTGAAAAATAAGACTAATC
CACTTTCTTCCCTCCATTCATTCTAACATGTCATAATACTTTTTGGTCTGTCTCATCCTC
TAAGTGAATTTCATTTTGCTCCTCAATTAGCCAGCATCCCTACCCCCATGTTAAGATTTT
ATTGAAATCCCTTTCTCTTCCCTCTGAGATCACTTTGATACTCACTGCCCAAGAGGGTAG
GACCACCAATTAGGAGAAAGACCACCTAAAAAAGGTAAGCTGTGCCATAATGTACAGAGA
TATATATAGATCTCATTGTGTAATTCTGGATAGTTAAAGATGACTCCACGCTTTTCTCCA
GCATTTTGACATAGAGACTCATGCTCTAATCTCTAGGAAATGTGATTATTTGTTCAAACT
AATAATAGGGGAAAAGAAGGGAGGGGAATTTTAGAATCCAATGCTGCTAAAGCACATTGA
AACCAAATCTTGGTTTTAATGGGTGTACACTTTGAATATATATTTTCACTAACCAAGGAG
AAAGATTAGGCAAAGCTGTTATAAAGAAAGGTGCCTTTCAGAGAATACCTATGTTTGCAT
CACTGATAAAGTGTGATTCTTAGCTCTCATAATGTACATTAGCGCTACTGTAGCTAATTG
AGAATTGTCATGTTTTTACCATATACGGAATACTTTTTGTACTATAAAAACATTTCTCCC
AAGTTTCATTTCTGGGTCAGAATAACCCTGAGAAAGCACATTTTTCTGTTTCAGAATTTG
TGACTTTGTATGGAAATCTATGTATTTGCAAATGAAATTTAAAGTACTCTTCCCTTAAAG
GTTCTGCTTGTAAACTGATTTGCTTAATAACTCTGAGCATGGTGGTGGTTATGAACTTGA
ATATATTATAAAACCTGGCTGAATTCAGATATATCAACAGATTGTTAAAGTAGCTTATGA
AATAAAAAATACTATTAAAAATAATTGCTGAGACTTTGCTATATTGTAATTTTAGTCATG
TAAAATATGGATAAAATTAATAAAATTTCTTTCAATTAATGGGAGAAAAAATAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTTCTCCATAAAATAAACCTTCAAGAAAAAGAAACAAAGCCTTTATCCCTCCAAAGG
AACATTTGGCTAGCAGACAGGAATCAAGACGTTAGGCTTATGGTGGATGAGCTTTGGCAC
GTGCCACCCTAATCCTAGCCAGTGTTCCGTGGTTGCCTTCCTTTCTGTCACATGCCAGAT
AGAAAATTCATCTCTTACGTCTGCTTTACGAAGCAAGCCAAGCACATCTTGCTGAATTAT
TTCTTCGTCATGAATAGCCTTAACATTAATTTTGTATTCATATGTACTGAGGGTCTTCAT
GAACTTTATACTCTAAATTCCACTGAATTGGGCCTGCCTCATTTTTCTTGGCTTCCTCCA
AACTTTCCTTTTTATTACCATTCACATTCTTTGTACTTTGACATTTTGTTCATTAAGTTC
ATCTCTCCCTATAGAATCTCACCCTATTGCATGGTTTCCATTTTATTTTTCACGTCTTAA
CACATTGTGAAGAGTTTTCTGTGCAAAGCAAAACCAAAATTTTGAAAAATAAGACTAATC
CACTTTCTTCCCTCCATTCATTCTAACATGTCATAATACTTTTTGGTCTGTCTCATCCTC
TAAGTGAATTTCATTTTGCTCCTCAATTAGCCAGCATCCCTACCCCCATGTTAAGATTTT
ATTGAAATCCCTTTCTCTTCCCTCTGAGATCACTTTGATACTCACTGCCCAAGAGGGTAG
GACCACCAATTAGGAGAAAGACCACCTAAAAAAGGTAAGCTGTGCCATAATGTACAGAGA
TATATATAGATCTCATTGTGTAATTCTGGATAGTTAAAGATGACTCCACGCTTTTCTCCA
GCATTTTGACATAGAGACTCATGCTCTAATCTCTAGGAAATGTGATTATTTGTTCAAACT
AATAATAGGGGAAAAGAAGGGAGGGGAATTTTAGAATCCAATGCTGCTAAAGCACATTGA
AACCAAATCTTGGTTTTAATGGGTGTACACTTTGAATATATATTTTCACTAACCAAGGAG
AAAGATTAGGCAAAGCTGTTATAAAGAAAGGTGCCTTTCAGAGAATACCTATGTTTGCAT
CACTGATAAAGTGTGATTCTTAGCTCTCATAATGTACATTAGCGCTACTGTAGCTAATTG
AGAATTGTCATGTTTTTACCATATACGGAATACTTTTTGTACTATAAAAACATTTCTCCC
AAGTTTCATTTCTGGGTCAGAATAACCCTGAGAAAGCACATTTTTCTGTTTCAGAATTTG
TGACTTTGTATGGAAATCTATGTATTTGCAAATGAAATTTAAAGTACTCTTCCCTTAAAG
GTTCTGCTTGTAAACTGATTTGCTTAATAACTCTGAGCATGGTGGTGGTTATGAACTTGA
ATATATTATAAAACCTGGCTGAATTCAGATATATCAACAGATTGTTAAAGTAGCTTATGA
AATAAAAAATACTATTAAAAATAATTGCTGAGACTTTGCTATATTGTAATTTTAGTCATG
TAAAATATGGATAAAATTAATAAAATTTCTTTCAATTAATGGGAGAAAAAATAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               691-803, + strand, RNAz p=0.550377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-803, + strand, RNAz p=0.550377

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_198990, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_198990, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               616-882, gnl|bosTau2|chrX (3642051-3642329)
               

               
               616-882, gnl|Hg17|chr7 (102335029-102334789)
               


               
               1053-1334, gnl|bosTau2|chrX (3642532-3642809)
               

               
               1053-1334, gnl|Hg17|chr7 (102334618-102334382)
               


               
               1390-1549, gnl|bosTau2|chrX (3642925-3643089)
               

               
               1390-1549, gnl|Hg17|chr7 (102334318-102334170)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               616-882, gnl|bosTau2|chrX (3642051-3642329)
               

               
               616-882, gnl|Hg17|chr7 (102335029-102334789)
               


               
               1053-1334, gnl|bosTau2|chrX (3642532-3642809)
               

               
               1053-1334, gnl|Hg17|chr7 (102334618-102334382)
               


               
               1390-1549, gnl|bosTau2|chrX (3642925-3643089)
               

               
               1390-1549, gnl|Hg17|chr7 (102334318-102334170)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fco (1.41487)
               

               
               cty (0.5204)
               

               
               lin (0.291206)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.41487)
               

               
               cty (0.5204)
               

               
               lin (0.291206)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	616-882, gnl\|bosTau2\|chrX (3642051-3642329)
	616-882, gnl\|Hg17\|chr7 (102335029-102334789)

	1053-1334, gnl\|bosTau2\|chrX (3642532-3642809)
	1053-1334, gnl\|Hg17\|chr7 (102334618-102334382)

	1390-1549, gnl\|bosTau2\|chrX (3642925-3643089)
	1390-1549, gnl\|Hg17\|chr7 (102334318-102334170)

	fco (1.41487)
	cty (0.5204)
	lin (0.291206)
	sag (0.182715)
	rec (0.17307)
	bfe (0.149858)
	liv (0.146284)
	hyp (0.142837)
	nca (0.136874)
	ste (0.135208)
	bla (0.124347)
	tra (0.123092)