Ss1.1-Pig4-TMW8009F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTGGCGGGGCTCCGGTCAACAGGACTGCTGCTCAGCCGGCCAGCGGCGGCGAGCGGCG GGGGCATGAGGGCTGGCCCGGAAAGCGGCTGCTGAGCCGGCTGGGAGGAGCGCCGGCCCC CGAGGATTCCGAGAGTGCGCTGCTCGGGCTGGGGCCGGGAGGCGCGGGGTGCCGGGCCCT CCCCTCAGGAACGTGTCCCGGGGCCGACCCGGCCCGTACGTAGTGTGGCAGCAGCTTCAG GTGTGTCCGTGGACAAGTGTGAGAGGCACTGTACTGTACCAGGCTTCCTTTAACTGGATC TTGGCAGATGGTAGGTGAGCCTGTGAAACAATATGAAGAGGAGAAAATAGCCTTTTAAGA AAATTGGCCCACAAAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATAT TCGACAGTCACATGTGACCAGTGATGACACAGGAATGTGTGAGATGGTTCTCATTGATCA TGATGTTGACCTAGAGAAGATTCATCCTCCTTCAGTGCCTGGAGACAGTGGGTCAGAAAT TCAGGGAAGCAATGGTGAGACTCAGGGCTATGTATATGCCCAGTCAGTCGATATTACCTC AAGTTGGGACTTTGGTATTAGAAGACGCTCAAATACAGCTCAAAGATTAGAACGACTCCG AAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAA GCAATCAGCCCAAGAGTTAAAGTCACTGTTTGAAAAAAAGTCGCTCANAGAGAAACCTCC AAATTCTGGAAAACAGTCAATATTATCTGTACGCCTGGAGCAGTGCCCTCTGCAGCTGAA TAATCCCCTTTACGAGTATTCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTGGCGGGGCTCCGGTCAACAGGACTGCTGCTCAGCCGGCCAGCGGCGGCGAGCGGCG GGGGCATGAGGGCTGGCCCGGAAAGCGGCTGCTGAGCCGGCTGGGAGGAGCGCCGGCCCC CGAGGATTCCGAGAGTGCGCTGCTCGGGCTGGGGCCGGGAGGCGCGGGGTGCCGGGCCCT CCCCTCAGGAACGTGTCCCGGGGCCGACCCGGCCCGTACGTAGTGTGGCAGCAGCTTCAG GTGTGTCCGTGGACAAGTGTGAGAGGCACTGTACTGTACCAGGCTTCCTTTAACTGGATC TTGGCAGATGGTAGGTGAGCCTGTGAAACAATATGAAGAGGAGAAAATAGCCTTTTAAGA AAATTGGCCCACAAAAAGGATGGCCTTCTTGGACAATCCAACTATCATTCTAGCTCATAT TCGACAGTCACATGTGACCAGTGATGACACAGGAATGTGTGAGATGGTTCTCATTGATCA TGATGTTGACCTAGAGAAGATTCATCCTCCTTCAGTGCCTGGAGACAGTGGGTCAGAAAT TCAGGGAAGCAATGGTGAGACTCAGGGCTATGTATATGCCCAGTCAGTCGATATTACCTC AAGTTGGGACTTTGGTATTAGAAGACGCTCAAATACAGCTCAAAGATTAGAACGACTCCG AAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAA GCAATCAGCCCAAGAGTTAAAGTCACTGTTTGAAAAAAAGTCGCTCANAGAGAAACCTCC AAATTCTGGAAAACAGTCAATATTATCTGTACGCCTGGAGCAGTGCCCTCTGCAGCTGAA TAATCCCCTTTACGAGTATTCCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 389-548, + strand, RNAz p=0.605709 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 389-548, + strand, RNAz p=0.605709 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-242, gnl|bosTau2|chr24 (24000888-24000650) | |
| 1-242, gnl|canFam2|chr9 (60789090-60788821) | |
| 1-242, gnl|dasNov1|scaffold_347 (150277-150026) | |
| 1-242, gnl|echTel1|scaffold_289757 (45964-46227) | |
| 1-242, gnl|hg17|chr9 (125548790-125549047) | |
| 1-242, gnl|Hg17|chr9 (125549040-125548802) | |
| 1-242, gnl|loxAfr1|scaffold_5992 (33731-33474) | |
| 1-242, gnl|mm7|chr2 (34414416-34414177) | |
| 1-242, gnl|Mm7|chr2 (34414182-34414402) | |
| 1-242, gnl|oryCun1|scaffold_97512 (2153-1921) | |
| 1-242, gnl|panTro1|chr11 (110351210-110351467) | |
| 1-242, gnl|rheMac2|chr15 (100903767-100903510) | |
| 1-242, gnl|rn3|chr3 (13336522-13336265) | |
| 310-648, gnl|bosTau2|chr24 (23972122-23971785) | |
| 310-648, gnl|Hg17|chr9 (125514477-125514140) | |
| 310-648, gnl|Mm7|chr2 (34439313-34439650) | |
| 726-864, gnl|bosTau2|chr24 (23954256-23954118) | |
| 726-864, gnl|canFam2|chr9 (60835485-60835301) | |
| 726-864, gnl|danRer3|chrNA (115316459-115316302) | |
| 726-864, gnl|dasNov1|scaffold_9887 (47691-47508) | |
| 726-864, gnl|echTel1|scaffold_289757 (3746-3929) | |
| 726-864, gnl|fr1|chrUn (273644188-273644363) | |
| 726-864, gnl|galGal2|chr17 (741516-741333) | |
| 726-864, gnl|hg17|chr9 (125499478-125499659) | |
| 726-864, gnl|Hg17|chr9 (125499635-125499497) | |
| 726-864, gnl|loxAfr1|scaffold_78364 (4522-4339) | |
| 726-864, gnl|mm7|chr2 (34451725-34451544) | |
| 726-864, gnl|Mm7|chr2 (34451566-34451704) | |
| 726-864, gnl|monDom2|scaffold_38 (20039732-20039914) | |
| 726-864, gnl|oryCun1|scaffold_182149 (43917-43734) | |
| 726-864, gnl|panTro1|chr11 (110299859-110300040) | |
| 726-864, gnl|rheMac2|chr15 (100958573-100958392) | |
| 726-864, gnl|rn3|chr3 (13373852-13373672) | |
| 726-864, gnl|tetNig1|chrUn_random (35757219-35757374) | |
| 726-864, gnl|xenTro1|scaffold_317 (1250809-1250997) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-242, gnl|bosTau2|chr24 (24000888-24000650) | |
| 1-242, gnl|canFam2|chr9 (60789090-60788821) | |
| 1-242, gnl|dasNov1|scaffold_347 (150277-150026) | |
| 1-242, gnl|echTel1|scaffold_289757 (45964-46227) | |
| 1-242, gnl|hg17|chr9 (125548790-125549047) | |
| 1-242, gnl|Hg17|chr9 (125549040-125548802) | |
| 1-242, gnl|loxAfr1|scaffold_5992 (33731-33474) | |
| 1-242, gnl|mm7|chr2 (34414416-34414177) | |
| 1-242, gnl|Mm7|chr2 (34414182-34414402) | |
| 1-242, gnl|oryCun1|scaffold_97512 (2153-1921) | |
| 1-242, gnl|panTro1|chr11 (110351210-110351467) | |
| 1-242, gnl|rheMac2|chr15 (100903767-100903510) | |
| 1-242, gnl|rn3|chr3 (13336522-13336265) | |
| 310-648, gnl|bosTau2|chr24 (23972122-23971785) | |
| 310-648, gnl|Hg17|chr9 (125514477-125514140) | |
| 310-648, gnl|Mm7|chr2 (34439313-34439650) | |
| 726-864, gnl|bosTau2|chr24 (23954256-23954118) | |
| 726-864, gnl|canFam2|chr9 (60835485-60835301) | |
| 726-864, gnl|danRer3|chrNA (115316459-115316302) | |
| 726-864, gnl|dasNov1|scaffold_9887 (47691-47508) | |
| 726-864, gnl|echTel1|scaffold_289757 (3746-3929) | |
| 726-864, gnl|fr1|chrUn (273644188-273644363) | |
| 726-864, gnl|galGal2|chr17 (741516-741333) | |
| 726-864, gnl|hg17|chr9 (125499478-125499659) | |
| 726-864, gnl|Hg17|chr9 (125499635-125499497) | |
| 726-864, gnl|loxAfr1|scaffold_78364 (4522-4339) | |
| 726-864, gnl|mm7|chr2 (34451725-34451544) | |
| 726-864, gnl|Mm7|chr2 (34451566-34451704) | |
| 726-864, gnl|monDom2|scaffold_38 (20039732-20039914) | |
| 726-864, gnl|oryCun1|scaffold_182149 (43917-43734) | |
| 726-864, gnl|panTro1|chr11 (110299859-110300040) | |
| 726-864, gnl|rheMac2|chr15 (100958573-100958392) | |
| 726-864, gnl|rn3|chr3 (13373852-13373672) | |
| 726-864, gnl|tetNig1|chrUn_random (35757219-35757374) | |
| 726-864, gnl|xenTro1|scaffold_317 (1250809-1250997) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |