Non-Coding RNA Search

Ss1.1-Pig4-TMW8009H02.5

Sequence:


               
               GAAAAACCATGAGTAAAGGCCGGGCGGAAGCCGCGGCGGGAGCCCCCGGGATCCTGCTGA
AATACCTGCAGGAGCAGAATCGGCCCTACAGCGCCCAGGACGTGTTCGGGAACCTGCAGC
GGGAACACGGACTGGGCAAGGCGGCGGTGGTCAAAGCGCTGGAGCAGCTGGCCCAGCAAG
GCAAGATCAAAGAGAAGGTGTACGGCAAGCAGAAGATATACTTTGCAGACCAGGACCAGT
TTGACATGGTCAGTGATGCTGACCTCCAAGGCCTGGATGCCAAAATCGTGGCCCTTACTG
CTAAGGTGCAGAGCTTGCAGCAGAGCTGCCGCCATATGGAGGCTGAGCTGAAGGAGTTAA
CAAGTGCCCTGACCACACCGGAGATGCAGAAGGAGATTCAGGAGTTAAAGAAGGAATGTG
CTGGCTACACCGAGAGACTGAAGAACATCAAAGCGGCCACCAACCACGTGACTCCCGAGG
AGAAGGAGCAGGTGCACAGAGAGAGGCAGAGGTACTGCAAGGAGTGGAGGAAGCGGAAGA
GGATGGCAACTGAGCTGTTTGATGCAATCCTTGAAGGCTATCCCAGGAGCAAGAAGCAGT
TCTTCGAGGAAGTGGGGATAGAGACAGATGAAGACCACAAGGTCACGCTCCCAGACCCCT
GAGGGCGCCTCCAGGAACGGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAACCATGAGTAAAGGCCGGGCGGAAGCCGCGGCGGGAGCCCCCGGGATCCTGCTGA
AATACCTGCAGGAGCAGAATCGGCCCTACAGCGCCCAGGACGTGTTCGGGAACCTGCAGC
GGGAACACGGACTGGGCAAGGCGGCGGTGGTCAAAGCGCTGGAGCAGCTGGCCCAGCAAG
GCAAGATCAAAGAGAAGGTGTACGGCAAGCAGAAGATATACTTTGCAGACCAGGACCAGT
TTGACATGGTCAGTGATGCTGACCTCCAAGGCCTGGATGCCAAAATCGTGGCCCTTACTG
CTAAGGTGCAGAGCTTGCAGCAGAGCTGCCGCCATATGGAGGCTGAGCTGAAGGAGTTAA
CAAGTGCCCTGACCACACCGGAGATGCAGAAGGAGATTCAGGAGTTAAAGAAGGAATGTG
CTGGCTACACCGAGAGACTGAAGAACATCAAAGCGGCCACCAACCACGTGACTCCCGAGG
AGAAGGAGCAGGTGCACAGAGAGAGGCAGAGGTACTGCAAGGAGTGGAGGAAGCGGAAGA
GGATGGCAACTGAGCTGTTTGATGCAATCCTTGAAGGCTATCCCAGGAGCAAGAAGCAGT
TCTTCGAGGAAGTGGGGATAGAGACAGATGAAGACCACAAGGTCACGCTCCCAGACCCCT
GAGGGCGCCTCCAGGAACGGGGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7328534|dbj|BAA92872.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7328534|dbj|BAA92872.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-144, - strand, RNAz p=0.521313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-144, - strand, RNAz p=0.521313

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               41-144, gnl|bosTau2|chr19 (38805159-38805262)
               

               
               41-144, gnl|canFam2|chr9 (23704413-23704261)
               

               
               41-144, gnl|danRer3|chr3 (33021099-33020983)
               

               
               41-144, gnl|fr1|chrUn (22746830-22746968)
               

               
               41-144, gnl|hg17|chr17 (37982999-37983150)
               

               
               41-144, gnl|Hg17|chr17 (37983107-37983004)
               

               
               41-144, gnl|loxAfr1|scaffold_23054 (12425-12271)
               

               
               41-144, gnl|mm7|chr11 (101204191-101204341)
               

               
               41-144, gnl|Mm7|chr11 (101204299-101204196)
               

               
               41-144, gnl|monDom2|scaffold_18 (53032383-53032525)
               

               
               41-144, gnl|oryCun1|scaffold_176127 (50950-51100)
               

               
               41-144, gnl|panTro1|chr19 (41185678-41185829)
               

               
               41-144, gnl|rheMac2|chr16 (52699563-52699710)
               

               
               41-144, gnl|rn3|chr10 (90126138-90126287)
               

               
               41-144, gnl|tetNig1|chr3 (12387008-12387128)
               


               
               345-511, gnl|bosTau2|chr19 (38808439-38808606)
               

               
               345-511, gnl|Hg17|chr17 (37979168-37979001)
               

               
               345-511, gnl|Mm7|chr11 (101202048-101201885)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-144, gnl|bosTau2|chr19 (38805159-38805262)
               

               
               41-144, gnl|canFam2|chr9 (23704413-23704261)
               

               
               41-144, gnl|danRer3|chr3 (33021099-33020983)
               

               
               41-144, gnl|fr1|chrUn (22746830-22746968)
               

               
               41-144, gnl|hg17|chr17 (37982999-37983150)
               

               
               41-144, gnl|Hg17|chr17 (37983107-37983004)
               

               
               41-144, gnl|loxAfr1|scaffold_23054 (12425-12271)
               

               
               41-144, gnl|mm7|chr11 (101204191-101204341)
               

               
               41-144, gnl|Mm7|chr11 (101204299-101204196)
               

               
               41-144, gnl|monDom2|scaffold_18 (53032383-53032525)
               

               
               41-144, gnl|oryCun1|scaffold_176127 (50950-51100)
               

               
               41-144, gnl|panTro1|chr19 (41185678-41185829)
               

               
               41-144, gnl|rheMac2|chr16 (52699563-52699710)
               

               
               41-144, gnl|rn3|chr10 (90126138-90126287)
               

               
               41-144, gnl|tetNig1|chr3 (12387008-12387128)
               


               
               345-511, gnl|bosTau2|chr19 (38808439-38808606)
               

               
               345-511, gnl|Hg17|chr17 (37979168-37979001)
               

               
               345-511, gnl|Mm7|chr11 (101202048-101201885)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	41-144, gnl\|bosTau2\|chr19 (38805159-38805262)
	41-144, gnl\|canFam2\|chr9 (23704413-23704261)
	41-144, gnl\|danRer3\|chr3 (33021099-33020983)
	41-144, gnl\|fr1\|chrUn (22746830-22746968)
	41-144, gnl\|hg17\|chr17 (37982999-37983150)
	41-144, gnl\|Hg17\|chr17 (37983107-37983004)
	41-144, gnl\|loxAfr1\|scaffold_23054 (12425-12271)
	41-144, gnl\|mm7\|chr11 (101204191-101204341)
	41-144, gnl\|Mm7\|chr11 (101204299-101204196)
	41-144, gnl\|monDom2\|scaffold_18 (53032383-53032525)
	41-144, gnl\|oryCun1\|scaffold_176127 (50950-51100)
	41-144, gnl\|panTro1\|chr19 (41185678-41185829)
	41-144, gnl\|rheMac2\|chr16 (52699563-52699710)
	41-144, gnl\|rn3\|chr10 (90126138-90126287)
	41-144, gnl\|tetNig1\|chr3 (12387008-12387128)

	345-511, gnl\|bosTau2\|chr19 (38808439-38808606)
	345-511, gnl\|Hg17\|chr17 (37979168-37979001)
	345-511, gnl\|Mm7\|chr11 (101202048-101201885)