Non-Coding RNA Search

Ss1.1-Pig4-TMW8009I17.5

Sequence:


               
               GGCACAGGGGTCCCTGGAGGAGCAGCTGCTCCAGGAGCTCAGCAGCCTCATCCTGAGGAA
GGGAGAGGCCACCGTGGGCCTGGGTAACCCCTCCCAGCCCTCCAGCCCCCAGCCCCCGAG
CCCCAGTGGCCTCGCCACACAGACGCCTGGCTTCTCCACCCCAGCTCCCTGCACTTCCAG
TCCACCCCCCGGCCAGCCCCTCACATGACTCCGACCAGCAGTCGGAGGGGTTAGGTAACC
AAGGACCCGGGCTCTCCCCGTGGCAGACGCTGCTGGGAGTGTCCTCTGCCCTGGCTGGGA
AGACTCTAGAACCCAGCAAGTTGCTGCGCAGGGAGCACAGGGCCAAGGGCCTTCGAGGCT
GTGACCTGCTCAGAGAGGGGCAGGTGCTGGCGCCTCTCCAGGCCTCTACTGACATATCTG
TACCCAGTAACTGAAAGAAGGGGAGCCGTAGTGTCGGACCGGCTATTTCTCAGAGCCGTA
AGGCCTACACGGCTCCCTTCGAGAAGAGCAACTCCTGCTTTATATATTTGATATGTCGGG
GTTCTAGGAGGGATTTGGTGTTTGAAAAGAATGGTTTTACTGCATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACAGGGGTCCCTGGAGGAGCAGCTGCTCCAGGAGCTCAGCAGCCTCATCCTGAGGAA
GGGAGAGGCCACCGTGGGCCTGGGTAACCCCTCCCAGCCCTCCAGCCCCCAGCCCCCGAG
CCCCAGTGGCCTCGCCACACAGACGCCTGGCTTCTCCACCCCAGCTCCCTGCACTTCCAG
TCCACCCCCCGGCCAGCCCCTCACATGACTCCGACCAGCAGTCGGAGGGGTTAGGTAACC
AAGGACCCGGGCTCTCCCCGTGGCAGACGCTGCTGGGAGTGTCCTCTGCCCTGGCTGGGA
AGACTCTAGAACCCAGCAAGTTGCTGCGCAGGGAGCACAGGGCCAAGGGCCTTCGAGGCT
GTGACCTGCTCAGAGAGGGGCAGGTGCTGGCGCCTCTCCAGGCCTCTACTGACATATCTG
TACCCAGTAACTGAAAGAAGGGGAGCCGTAGTGTCGGACCGGCTATTTCTCAGAGCCGTA
AGGCCTACACGGCTCCCTTCGAGAAGAGCAACTCCTGCTTTATATATTTGATATGTCGGG
GTTCTAGGAGGGATTTGGTGTTTGAAAAGAATGGTTTTACTGCATTAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-122, - strand, RNAz p=0.834325
               

               
               241-353, + strand, RNAz p=0.997478

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-122, - strand, RNAz p=0.834325
               

               
               241-353, + strand, RNAz p=0.997478

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               4-100, - strand, RNAmicro p=0.998603

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               4-100, - strand, RNAmicro p=0.998603

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC009968, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC009968, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-588, gnl|bosTau2|chr7 (35486523-35485938)
               

               
               3-588, gnl|Hg17|chr5 (141013906-141013328)
               

               
               3-588, gnl|Mm7|chr18 (38349578-38349005)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-588, gnl|bosTau2|chr7 (35486523-35485938)
               

               
               3-588, gnl|Hg17|chr5 (141013906-141013328)
               

               
               3-588, gnl|Mm7|chr18 (38349578-38349005)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	3-122, - strand, RNAz p=0.834325
	241-353, + strand, RNAz p=0.997478

	3-588, gnl\|bosTau2\|chr7 (35486523-35485938)
	3-588, gnl\|Hg17\|chr5 (141013906-141013328)
	3-588, gnl\|Mm7\|chr18 (38349578-38349005)