Ss1.1-Pig4-TMW8009J10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTCTGGCGGCGACTCCCGGGAAAAGCAAATGGCAGAGGCGTCAGGGTCTCGGCACCGC TCTCTGTATAAACTGGTGGGCTCGCCGCCTTGGAAGGCGGCTTTTAGGCAGGGATGCCTG GAGAGAATGAGAAACAGCCGGGACAGGCTCCTGAACAGATATCGCCAGACTGGAAGCAAT ATGTCAGGGGGAGCTCGAAATAGCCTTCTGGTGCAGGAGGTGATGGAAGAAGAGTGGAAT GCTTTGCAGTCGGCGAAGAGCTGGCCAGGAGCCTTGGCACAGTTGGAGGAGCCCATGGAT CTGGCTGTGTTGGAGGAAATCCAACAGGAGCTGATTGATCAAGAACTATCCATCATCAGC GAGTATGAGAAGAGCTTGCAGTTTGATGAAAAGTGTCTCAGCGTCATGCTGGCCGAGTGG GAAGCAAACCCTCTCATCTGTCCTGTGTGTACAAAGTACAACCTGAGAATAGCGAGCGGT GTGGTCCTGTGTCAGTGTGGCCTCTACATCCAGTCTCATTCTCCAGACTTGACAGAACAG AAGCTCCGTGCCTGTTTAGAAGACAGTGTCAACGAGCACAGTGCACATTGTTCCCACACG CCAGAATTCTCCGTCACGGAAGGGACAGAGGAAAAGTCCAGTCTTCTCATGAGCTGTCTG GCTTGTGATACTTGGGCCGTGATCCTCTAGAGCCAGCAGTCTACTGGGTTGGAAAGTTCC ATCTTGAGAAGGGGCCTTATAAATACAAACCTTTTATTATTTATCCTTTATTTTGTATTA AAGCTTTTCAAGGCACTCGAGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTCTGGCGGCGACTCCCGGGAAAAGCAAATGGCAGAGGCGTCAGGGTCTCGGCACCGC TCTCTGTATAAACTGGTGGGCTCGCCGCCTTGGAAGGCGGCTTTTAGGCAGGGATGCCTG GAGAGAATGAGAAACAGCCGGGACAGGCTCCTGAACAGATATCGCCAGACTGGAAGCAAT ATGTCAGGGGGAGCTCGAAATAGCCTTCTGGTGCAGGAGGTGATGGAAGAAGAGTGGAAT GCTTTGCAGTCGGCGAAGAGCTGGCCAGGAGCCTTGGCACAGTTGGAGGAGCCCATGGAT CTGGCTGTGTTGGAGGAAATCCAACAGGAGCTGATTGATCAAGAACTATCCATCATCAGC GAGTATGAGAAGAGCTTGCAGTTTGATGAAAAGTGTCTCAGCGTCATGCTGGCCGAGTGG GAAGCAAACCCTCTCATCTGTCCTGTGTGTACAAAGTACAACCTGAGAATAGCGAGCGGT GTGGTCCTGTGTCAGTGTGGCCTCTACATCCAGTCTCATTCTCCAGACTTGACAGAACAG AAGCTCCGTGCCTGTTTAGAAGACAGTGTCAACGAGCACAGTGCACATTGTTCCCACACG CCAGAATTCTCCGTCACGGAAGGGACAGAGGAAAAGTCCAGTCTTCTCATGAGCTGTCTG GCTTGTGATACTTGGGCCGTGATCCTCTAGAGCCAGCAGTCTACTGGGTTGGAAAGTTCC ATCTTGAGAAGGGGCCTTATAAATACAAACCTTTTATTATTTATCCTTTATTTTGTATTA AAGCTTTTCAAGGCACTCGAGTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 154-265, - strand, RNAz p=0.559321 | |
| 342-458, - strand, RNAz p=0.574412 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 154-265, - strand, RNAz p=0.559321 | |
| 342-458, - strand, RNAz p=0.574412 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 110-282, gnl|bosTau2|chr19 (15172220-15172392) | |
| 110-282, gnl|canFam2|chr5 (34362265-34362103) | |
| 110-282, gnl|dasNov1|scaffold_4090 (37621-37456) | |
| 110-282, gnl|echTel1|scaffold_323436 (46918-47083) | |
| 110-282, gnl|fr1|chrUn (215708381-215708215) | |
| 110-282, gnl|galGal2|chr19 (3182360-3182236) | |
| 110-282, gnl|hg17|chr17 (5265322-5265487) | |
| 110-282, gnl|Hg17|chr17 (5265338-5265510) | |
| 110-282, gnl|loxAfr1|scaffold_60282 (8896-8731) | |
| 110-282, gnl|mm7|chr11 (71053317-71053485) | |
| 110-282, gnl|Mm7|chr11 (71053336-71053508) | |
| 110-282, gnl|monDom2|scaffold_223 (351052-350901) | |
| 110-282, gnl|oryCun1|scaffold_135054 (6159-5994) | |
| 110-282, gnl|panTro1|chr19_random (46520571-46520406) | |
| 110-282, gnl|rheMac2|chr16 (5161459-5161624) | |
| 110-282, gnl|rn3|chr10 (57889331-57889500) | |
| 110-282, gnl|tetNig1|chrUn_random (37192214-37192370) | |
| 110-282, gnl|xenTro1|scaffold_227 (1587556-1587719) | |
| 342-458, gnl|bosTau2|chr19 (15176097-15176213) | |
| 342-458, gnl|canFam2|chr5 (34359737-34359590) | |
| 342-458, gnl|dasNov1|scaffold_4090 (32502-32350) | |
| 342-458, gnl|echTel1|scaffold_314990 (1567-1718) | |
| 342-458, gnl|fr1|chrUn (215707567-215707414) | |
| 342-458, gnl|galGal2|chr19 (3181300-3181154) | |
| 342-458, gnl|hg17|chr17 (5270004-5270156) | |
| 342-458, gnl|Hg17|chr17 (5270013-5270129) | |
| 342-458, gnl|loxAfr1|scaffold_60282 (6112-5960) | |
| 342-458, gnl|mm7|chr11 (71055365-71055518) | |
| 342-458, gnl|Mm7|chr11 (71055374-71055490) | |
| 342-458, gnl|monDom2|scaffold_223 (349992-349856) | |
| 342-458, gnl|oryCun1|scaffold_135054 (4513-4361) | |
| 342-458, gnl|panTro1|chr19_random (46515890-46515738) | |
| 342-458, gnl|rheMac2|chr16 (5166588-5166740) | |
| 342-458, gnl|rn3|chr10 (57891800-57891952) | |
| 342-458, gnl|tetNig1|chrUn_random (37192969-37193124) | |
| 342-458, gnl|xenTro1|scaffold_227 (1588793-1589000) | |
| 516-661, gnl|bosTau2|chr19 (18536749-18536894) | |
| 516-661, gnl|Hg17|chr17 (5272111-5272256) | |
| 516-661, gnl|Mm7|chr11 (71056470-71056615) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 110-282, gnl|bosTau2|chr19 (15172220-15172392) | |
| 110-282, gnl|canFam2|chr5 (34362265-34362103) | |
| 110-282, gnl|dasNov1|scaffold_4090 (37621-37456) | |
| 110-282, gnl|echTel1|scaffold_323436 (46918-47083) | |
| 110-282, gnl|fr1|chrUn (215708381-215708215) | |
| 110-282, gnl|galGal2|chr19 (3182360-3182236) | |
| 110-282, gnl|hg17|chr17 (5265322-5265487) | |
| 110-282, gnl|Hg17|chr17 (5265338-5265510) | |
| 110-282, gnl|loxAfr1|scaffold_60282 (8896-8731) | |
| 110-282, gnl|mm7|chr11 (71053317-71053485) | |
| 110-282, gnl|Mm7|chr11 (71053336-71053508) | |
| 110-282, gnl|monDom2|scaffold_223 (351052-350901) | |
| 110-282, gnl|oryCun1|scaffold_135054 (6159-5994) | |
| 110-282, gnl|panTro1|chr19_random (46520571-46520406) | |
| 110-282, gnl|rheMac2|chr16 (5161459-5161624) | |
| 110-282, gnl|rn3|chr10 (57889331-57889500) | |
| 110-282, gnl|tetNig1|chrUn_random (37192214-37192370) | |
| 110-282, gnl|xenTro1|scaffold_227 (1587556-1587719) | |
| 342-458, gnl|bosTau2|chr19 (15176097-15176213) | |
| 342-458, gnl|canFam2|chr5 (34359737-34359590) | |
| 342-458, gnl|dasNov1|scaffold_4090 (32502-32350) | |
| 342-458, gnl|echTel1|scaffold_314990 (1567-1718) | |
| 342-458, gnl|fr1|chrUn (215707567-215707414) | |
| 342-458, gnl|galGal2|chr19 (3181300-3181154) | |
| 342-458, gnl|hg17|chr17 (5270004-5270156) | |
| 342-458, gnl|Hg17|chr17 (5270013-5270129) | |
| 342-458, gnl|loxAfr1|scaffold_60282 (6112-5960) | |
| 342-458, gnl|mm7|chr11 (71055365-71055518) | |
| 342-458, gnl|Mm7|chr11 (71055374-71055490) | |
| 342-458, gnl|monDom2|scaffold_223 (349992-349856) | |
| 342-458, gnl|oryCun1|scaffold_135054 (4513-4361) | |
| 342-458, gnl|panTro1|chr19_random (46515890-46515738) | |
| 342-458, gnl|rheMac2|chr16 (5166588-5166740) | |
| 342-458, gnl|rn3|chr10 (57891800-57891952) | |
| 342-458, gnl|tetNig1|chrUn_random (37192969-37193124) | |
| 342-458, gnl|xenTro1|scaffold_227 (1588793-1589000) | |
| 516-661, gnl|bosTau2|chr19 (18536749-18536894) | |
| 516-661, gnl|Hg17|chr17 (5272111-5272256) | |
| 516-661, gnl|Mm7|chr11 (71056470-71056615) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| tes (0.207814) | |
| col (0.195008) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| col (0.195008) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| jej (0.0989218) |