Non-Coding RNA Search

Ss1.1-Pig4-TMW8009N01.5

Sequence:


               
               GCTACGTTGCCCCCCTGACCTGCAGCCCCCAGCCCGAATACGTGAACCAGCCGGAGGTTC
GGCCACAGCCCCCCTCGCCCCTAGAGGGTCCTCTGCCTCCTCCTCGACCTACTGGAGCCA
CCCTGGAAAGGCCCAAGACGCTCTCCCCTGGAAGGAACGGGGTTGTCAAGGACGTTTTTG
CCTTTGGTGCTGCAGTGGAGAATCCAGAGTACTTGGCACCCCGGGGCAGGGCTCCCTCTC
AGAACCACCCTTCTCCGGCCTTCAGCCCAGCCTTTGACAACCTCTATTACTGGGACCAGG
ACCCATCAGACCGGGGCGCTCTACCCAGCACCTTTGAAGGGACCCCGACTGCAGAGAACC
CCGAATACCTGGGTCTGGATGTGCCAGTATGAGCCAAAAGGCCAGGTCCACTGAGGCCGT
GCTGAACCCTCAGGGAGCGTAGAAGGCCTGATGTCTGGGCCACATCGGGACGACGCAGCG
AGAAGGCCCTTGGACCACGTCCTGGGAAGCCTGCTGTGCCAGGCATGTCTCTTCCTACTC
CGATTCCTAGCTGGCTGAGAGTGGCCTGGCCTGGCTGCCAAAGTGGGCAGCCCCGGGGAG
TCTTGATCCTGGAGCCCTGCCCCAGCAAACTCTAGGGTCCACAGGATGCCACAGCCACAA
TCTCCTGACCTGCAGGAGCAGCCCAGCTGACTTTTCTTCTAGACCCTTGGCACGGACTTA
GAGAAGCTGGGCCTCCAACTTAGAGAAGGGGCTCCAAGGGGATGTCTAGGAACCAGAGCA
ATCCAGAGACTGTCCCTGAAACCTAGCTTGGCCCCTAGGAAGAAGGGGGCAGCATCACCC
AGATCCAGTCCTTGTACAGAGTGGGGATTTTTGGTTTCGTTTTTACGTATGTTTTGGGTT
TTTGTTCTTTTTTTTTAAGATGAAATAACTACTTGAAATAGACAGTGGCTTCTAGAGAAG
GCGGGATCTCGGGGGTTGGGGGAGGGATGTCCCTTCTCCACCCACTTTTTCCTTTTGCAA
ATATATTTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACGTTGCCCCCCTGACCTGCAGCCCCCAGCCCGAATACGTGAACCAGCCGGAGGTTC
GGCCACAGCCCCCCTCGCCCCTAGAGGGTCCTCTGCCTCCTCCTCGACCTACTGGAGCCA
CCCTGGAAAGGCCCAAGACGCTCTCCCCTGGAAGGAACGGGGTTGTCAAGGACGTTTTTG
CCTTTGGTGCTGCAGTGGAGAATCCAGAGTACTTGGCACCCCGGGGCAGGGCTCCCTCTC
AGAACCACCCTTCTCCGGCCTTCAGCCCAGCCTTTGACAACCTCTATTACTGGGACCAGG
ACCCATCAGACCGGGGCGCTCTACCCAGCACCTTTGAAGGGACCCCGACTGCAGAGAACC
CCGAATACCTGGGTCTGGATGTGCCAGTATGAGCCAAAAGGCCAGGTCCACTGAGGCCGT
GCTGAACCCTCAGGGAGCGTAGAAGGCCTGATGTCTGGGCCACATCGGGACGACGCAGCG
AGAAGGCCCTTGGACCACGTCCTGGGAAGCCTGCTGTGCCAGGCATGTCTCTTCCTACTC
CGATTCCTAGCTGGCTGAGAGTGGCCTGGCCTGGCTGCCAAAGTGGGCAGCCCCGGGGAG
TCTTGATCCTGGAGCCCTGCCCCAGCAAACTCTAGGGTCCACAGGATGCCACAGCCACAA
TCTCCTGACCTGCAGGAGCAGCCCAGCTGACTTTTCTTCTAGACCCTTGGCACGGACTTA
GAGAAGCTGGGCCTCCAACTTAGAGAAGGGGCTCCAAGGGGATGTCTAGGAACCAGAGCA
ATCCAGAGACTGTCCCTGAAACCTAGCTTGGCCCCTAGGAAGAAGGGGGCAGCATCACCC
AGATCCAGTCCTTGTACAGAGTGGGGATTTTTGGTTTCGTTTTTACGTATGTTTTGGGTT
TTTGTTCTTTTTTTTTAAGATGAAATAACTACTTGAAATAGACAGTGGCTTCTAGAGAAG
GCGGGATCTCGGGGGTTGGGGGAGGGATGTCCCTTCTCCACCCACTTTTTCCTTTTGCAA
ATATATTTTGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|182169|gb|AAC37531.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|182169|gb|AAC37531.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-274, - strand, RNAz p=0.691135
               

               
               775-887, - strand, RNAz p=0.644119

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-274, - strand, RNAz p=0.691135
               

               
               775-887, - strand, RNAz p=0.644119

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               36-576, gnl|bosTau2|chr19 (32365972-32366512)
               

               
               36-576, gnl|Hg17|chr17 (35137467-35138111)
               

               
               36-576, gnl|Mm7|chr11 (98545351-98545923)
               


               
               681-1032, gnl|bosTau2|chr19 (32366500-32366857)
               

               
               681-1032, gnl|Hg17|chr17 (35138002-35138432)
               

               
               681-1032, gnl|Mm7|chr11 (98545892-98546283)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-576, gnl|bosTau2|chr19 (32365972-32366512)
               

               
               36-576, gnl|Hg17|chr17 (35137467-35138111)
               

               
               36-576, gnl|Mm7|chr11 (98545351-98545923)
               


               
               681-1032, gnl|bosTau2|chr19 (32366500-32366857)
               

               
               681-1032, gnl|Hg17|chr17 (35138002-35138432)
               

               
               681-1032, gnl|Mm7|chr11 (98545892-98546283)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               jej (0.0989218)

	115-274, - strand, RNAz p=0.691135
	775-887, - strand, RNAz p=0.644119

	36-576, gnl\|bosTau2\|chr19 (32365972-32366512)
	36-576, gnl\|Hg17\|chr17 (35137467-35138111)
	36-576, gnl\|Mm7\|chr11 (98545351-98545923)

	681-1032, gnl\|bosTau2\|chr19 (32366500-32366857)
	681-1032, gnl\|Hg17\|chr17 (35138002-35138432)
	681-1032, gnl\|Mm7\|chr11 (98545892-98546283)

	amn (0.417711)
	cki (0.330469)
	sme (0.305437)
	nlu (0.191681)
	nep (0.183925)
	fhi (0.169578)
	nje (0.16592)
	nmm (0.132802)
	jej (0.0989218)