Non-Coding RNA Search

Ss1.1-Pig4-TMW8009N07.5

Sequence:


               
               CGAATTTTGAACCTTTGCACAAATTTCATACAAATTTTCTCAAGGAAATTGAGCAGCGAC
TCGCCCTGTGGGAAGGCCGCTCGAATGCCCACATCAGAGGAGATTTTTACCAAAGAATCG
GCGACGTGATGCTGAAGAACATCCAGGGCATGAAGCAACTGGCAGCTCACCTGTGGAAGC
ACAGCGAGGCTCTGGAGGCGCTGGAGACCAGCATCAGGGGCTCCCGGCGGCTGGAGAGCT
TGTGCCGGGACTTCGAGCTGCAGAAAGTGTGCTACCTGCCGCTCAACACCTTCCTCCTGC
GCCCGCTGCACCGGCTCATGCACTACAAGCAGGTCCTGGAGCGGCTGTGCAAGCACCACC
CGCCCAGCCACGCGGACTTCAGGGACTGCCGAGCTGCTTTGGCAGAGATCACGGAGATGG
TGGCACAGCTTCACGGTACGATGATCAAGATGGAGAATTTCCAGAAGCTGCATGAACTCA
AGAAAGATTTGATTGGCGTCGACAATCTTGTGATTCCAGGACGGGAATTCATCCGCCTGG
GCAGCCTCAGCAAACTCTCGGGGAAGGGGCTCCAGCAACGCATGTTCTTCCTGTTCAACG
ACGTGTTGCTGTACACGAGCAGGGGACTGACAGCCTCGAATCAGTTTAAAGTCCACGGGC
AGCTCCCGCTCTATGGCATGACGATGGAGGAAAGCGAAGACAGTGGGGGGGTGCCCCACT
GCCTCACCCTGCGGGGCCAGCGCCAGTCCATCATCGTGGCCGCCAGTTCTCGCTCCGAGA
TGGAAAAGTGGGTGGAGGACATACAGATGGCCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAATTTTGAACCTTTGCACAAATTTCATACAAATTTTCTCAAGGAAATTGAGCAGCGAC
TCGCCCTGTGGGAAGGCCGCTCGAATGCCCACATCAGAGGAGATTTTTACCAAAGAATCG
GCGACGTGATGCTGAAGAACATCCAGGGCATGAAGCAACTGGCAGCTCACCTGTGGAAGC
ACAGCGAGGCTCTGGAGGCGCTGGAGACCAGCATCAGGGGCTCCCGGCGGCTGGAGAGCT
TGTGCCGGGACTTCGAGCTGCAGAAAGTGTGCTACCTGCCGCTCAACACCTTCCTCCTGC
GCCCGCTGCACCGGCTCATGCACTACAAGCAGGTCCTGGAGCGGCTGTGCAAGCACCACC
CGCCCAGCCACGCGGACTTCAGGGACTGCCGAGCTGCTTTGGCAGAGATCACGGAGATGG
TGGCACAGCTTCACGGTACGATGATCAAGATGGAGAATTTCCAGAAGCTGCATGAACTCA
AGAAAGATTTGATTGGCGTCGACAATCTTGTGATTCCAGGACGGGAATTCATCCGCCTGG
GCAGCCTCAGCAAACTCTCGGGGAAGGGGCTCCAGCAACGCATGTTCTTCCTGTTCAACG
ACGTGTTGCTGTACACGAGCAGGGGACTGACAGCCTCGAATCAGTTTAAAGTCCACGGGC
AGCTCCCGCTCTATGGCATGACGATGGAGGAAAGCGAAGACAGTGGGGGGGTGCCCCACT
GCCTCACCCTGCGGGGCCAGCGCCAGTCCATCATCGTGGCCGCCAGTTCTCGCTCCGAGA
TGGAAAAGTGGGTGGAGGACATACAGATGGCCATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859642|ref|XP_603785.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859642|ref|XP_603785.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-271, + strand, RNAz p=0.857711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-271, + strand, RNAz p=0.857711

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK123565, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK123565, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               154-396, gnl|bosTau2|chr12 (44345401-44345159)
               

               
               154-396, gnl|canFam2|chr22 (51505260-51505533)
               

               
               154-396, gnl|danRer3|chrUn (33176679-33176417)
               

               
               154-396, gnl|dasNov1|scaffold_14070 (10303-10606)
               

               
               154-396, gnl|echTel1|scaffold_278440 (73277-73574)
               

               
               154-396, gnl|fr1|chrUn (95554778-95554522)
               

               
               154-396, gnl|galGal2|chr1 (137563770-137563497)
               

               
               154-396, gnl|hg17|chr13 (97881254-97881553)
               

               
               154-396, gnl|Hg17|chr13 (97881295-97881538)
               

               
               154-396, gnl|loxAfr1|scaffold_13624 (42406-42104)
               

               
               154-396, gnl|mm7|chr14 (115676041-115676321)
               

               
               154-396, gnl|Mm7|chr14 (115676069-115676311)
               

               
               154-396, gnl|monDom2|scaffold_11 (54181087-54180793)
               

               
               154-396, gnl|panTro1|chr14 (81104742-81105041)
               

               
               154-396, gnl|rheMac2|chr17 (78808015-78808314)
               

               
               154-396, gnl|rn3|chr15 (106258311-106258591)
               

               
               154-396, gnl|tetNig1|chr2 (10817827-10818082)
               

               
               154-396, gnl|xenTro1|scaffold_128 (1803362-1803642)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-396, gnl|bosTau2|chr12 (44345401-44345159)
               

               
               154-396, gnl|canFam2|chr22 (51505260-51505533)
               

               
               154-396, gnl|danRer3|chrUn (33176679-33176417)
               

               
               154-396, gnl|dasNov1|scaffold_14070 (10303-10606)
               

               
               154-396, gnl|echTel1|scaffold_278440 (73277-73574)
               

               
               154-396, gnl|fr1|chrUn (95554778-95554522)
               

               
               154-396, gnl|galGal2|chr1 (137563770-137563497)
               

               
               154-396, gnl|hg17|chr13 (97881254-97881553)
               

               
               154-396, gnl|Hg17|chr13 (97881295-97881538)
               

               
               154-396, gnl|loxAfr1|scaffold_13624 (42406-42104)
               

               
               154-396, gnl|mm7|chr14 (115676041-115676321)
               

               
               154-396, gnl|Mm7|chr14 (115676069-115676311)
               

               
               154-396, gnl|monDom2|scaffold_11 (54181087-54180793)
               

               
               154-396, gnl|panTro1|chr14 (81104742-81105041)
               

               
               154-396, gnl|rheMac2|chr17 (78808015-78808314)
               

               
               154-396, gnl|rn3|chr15 (106258311-106258591)
               

               
               154-396, gnl|tetNig1|chr2 (10817827-10818082)
               

               
               154-396, gnl|xenTro1|scaffold_128 (1803362-1803642)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hyp (0.142837)

	154-396, gnl\|bosTau2\|chr12 (44345401-44345159)
	154-396, gnl\|canFam2\|chr22 (51505260-51505533)
	154-396, gnl\|danRer3\|chrUn (33176679-33176417)
	154-396, gnl\|dasNov1\|scaffold_14070 (10303-10606)
	154-396, gnl\|echTel1\|scaffold_278440 (73277-73574)
	154-396, gnl\|fr1\|chrUn (95554778-95554522)
	154-396, gnl\|galGal2\|chr1 (137563770-137563497)
	154-396, gnl\|hg17\|chr13 (97881254-97881553)
	154-396, gnl\|Hg17\|chr13 (97881295-97881538)
	154-396, gnl\|loxAfr1\|scaffold_13624 (42406-42104)
	154-396, gnl\|mm7\|chr14 (115676041-115676321)
	154-396, gnl\|Mm7\|chr14 (115676069-115676311)
	154-396, gnl\|monDom2\|scaffold_11 (54181087-54180793)
	154-396, gnl\|panTro1\|chr14 (81104742-81105041)
	154-396, gnl\|rheMac2\|chr17 (78808015-78808314)
	154-396, gnl\|rn3\|chr15 (106258311-106258591)
	154-396, gnl\|tetNig1\|chr2 (10817827-10818082)
	154-396, gnl\|xenTro1\|scaffold_128 (1803362-1803642)