Non-Coding RNA Search

Ss1.1-Pig4-TMW8010A20.5

Sequence:


               
               CTCTTCTACCTGGAGCAGTGCGAGGCGAACCTGACCACGCTGACCAACGCAGTGGACGCC
TTCTTCACCGCCGTGGCCACCAACCAGCCCCCCAAGATCTTCGTGGCACACAGCAAGTTC
GTCATCCTCAGCGCCCACAAGCTGGTGTTCATCGGGGACACGCTGTCGCGGCAGGCCAAG
GCGGCCGACGTGCGCAGCCAGGTGACCCACTACAGCAACCTGCTGTGCGACCTCCTGCGT
GGCATCGTGGCCACCACCAAGGCCGCCGCCCTGCAGTACCCGTCCCCCGCCGCCGCCCAG
GACATGGTAGACAGGGTCAAGGAGCTGGGCCACAGCACCCAGCAGTTCCGCCGGGTCCTG
GGCCAGCTGGCGGCTGCCTGAGAGCCGTCAGCCAGAGGGCAGAGGGCAGGGGAGGGGGGC
CGTGGGGGGCCCCAGAGAGCCGCCGTGCCGCAGGCGTGGGGACAGGCAGCCGCGGCTCCG
CCCGGGCCTGGTGCCCCAGACTGTCCAGGGATTTGTATATATTCATGACGGGGCAGGACG
TGGGCCGGTGCCTCCTCAGAGGAGCCTGAGCAGAGCTGGGCCCTGGAGCCGAGGCCCAGG
GCAGCTGGCAGACTTTCCTGAGTACGCTGCAGGCCCAGCGCTGGAGCCGGGCTGGGGGCT
CCCGGACCCCTCAGCCCCCAAGGCCTCAGGTGACCCCGTGGGCGGACCAGCCCTGGGAGG
GGGCCGTGTCCCCTGACAGGGCAAGCGCAGCTGTGGTGTGTTGCCTCTGCACCAGGAGAA
AAACCCTAAAAACTATTTTTCACTATTGGATTTTCCAATCATTTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTCTACCTGGAGCAGTGCGAGGCGAACCTGACCACGCTGACCAACGCAGTGGACGCC
TTCTTCACCGCCGTGGCCACCAACCAGCCCCCCAAGATCTTCGTGGCACACAGCAAGTTC
GTCATCCTCAGCGCCCACAAGCTGGTGTTCATCGGGGACACGCTGTCGCGGCAGGCCAAG
GCGGCCGACGTGCGCAGCCAGGTGACCCACTACAGCAACCTGCTGTGCGACCTCCTGCGT
GGCATCGTGGCCACCACCAAGGCCGCCGCCCTGCAGTACCCGTCCCCCGCCGCCGCCCAG
GACATGGTAGACAGGGTCAAGGAGCTGGGCCACAGCACCCAGCAGTTCCGCCGGGTCCTG
GGCCAGCTGGCGGCTGCCTGAGAGCCGTCAGCCAGAGGGCAGAGGGCAGGGGAGGGGGGC
CGTGGGGGGCCCCAGAGAGCCGCCGTGCCGCAGGCGTGGGGACAGGCAGCCGCGGCTCCG
CCCGGGCCTGGTGCCCCAGACTGTCCAGGGATTTGTATATATTCATGACGGGGCAGGACG
TGGGCCGGTGCCTCCTCAGAGGAGCCTGAGCAGAGCTGGGCCCTGGAGCCGAGGCCCAGG
GCAGCTGGCAGACTTTCCTGAGTACGCTGCAGGCCCAGCGCTGGAGCCGGGCTGGGGGCT
CCCGGACCCCTCAGCCCCCAAGGCCTCAGGTGACCCCGTGGGCGGACCAGCCCTGGGAGG
GGGCCGTGTCCCCTGACAGGGCAAGCGCAGCTGTGGTGTGTTGCCTCTGCACCAGGAGAA
AAACCCTAAAAACTATTTTTCACTATTGGATTTTCCAATCATTTTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833905|ref|XP_591826.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833905|ref|XP_591826.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-400, - strand, RNAz p=0.877163

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-400, - strand, RNAz p=0.877163

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-481, gnl|bosTau2|chr18 (5874438-5873967)
               

               
               1-481, gnl|Hg17|chr16 (73821290-73820774)
               

               
               1-481, gnl|Mm7|chr8 (110311307-110310783)
               


               
               718-824, gnl|bosTau2|chr18 (5873887-5873782)
               

               
               718-824, gnl|canFam2|chr5 (78504560-78504280)
               

               
               718-824, gnl|dasNov1|scaffold_90898 (2833-2535)
               

               
               718-824, gnl|echTel1|scaffold_185066 (9856-10154)
               

               
               718-824, gnl|hg17|chr16 (73820447-73820728)
               

               
               718-824, gnl|Hg17|chr16 (73820740-73820473)
               

               
               718-824, gnl|loxAfr1|scaffold_156258 (4750-4452)
               

               
               718-824, gnl|mm7|chr8 (110310534-110310740)
               

               
               718-824, gnl|Mm7|chr8 (110310749-110310559)
               

               
               718-824, gnl|panTro1|chr18 (68217867-68218156)
               

               
               718-824, gnl|rheMac2|chr20 (73332846-73333134)
               

               
               718-824, gnl|rn3|chr19 (41651075-41651279)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr18 (5874438-5873967)
               

               
               1-481, gnl|Hg17|chr16 (73821290-73820774)
               

               
               1-481, gnl|Mm7|chr8 (110311307-110310783)
               


               
               718-824, gnl|bosTau2|chr18 (5873887-5873782)
               

               
               718-824, gnl|canFam2|chr5 (78504560-78504280)
               

               
               718-824, gnl|dasNov1|scaffold_90898 (2833-2535)
               

               
               718-824, gnl|echTel1|scaffold_185066 (9856-10154)
               

               
               718-824, gnl|hg17|chr16 (73820447-73820728)
               

               
               718-824, gnl|Hg17|chr16 (73820740-73820473)
               

               
               718-824, gnl|loxAfr1|scaffold_156258 (4750-4452)
               

               
               718-824, gnl|mm7|chr8 (110310534-110310740)
               

               
               718-824, gnl|Mm7|chr8 (110310749-110310559)
               

               
               718-824, gnl|panTro1|chr18 (68217867-68218156)
               

               
               718-824, gnl|rheMac2|chr20 (73332846-73333134)
               

               
               718-824, gnl|rn3|chr19 (41651075-41651279)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ill (0.175593)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)

	1-481, gnl\|bosTau2\|chr18 (5874438-5873967)
	1-481, gnl\|Hg17\|chr16 (73821290-73820774)
	1-481, gnl\|Mm7\|chr8 (110311307-110310783)

	718-824, gnl\|bosTau2\|chr18 (5873887-5873782)
	718-824, gnl\|canFam2\|chr5 (78504560-78504280)
	718-824, gnl\|dasNov1\|scaffold_90898 (2833-2535)
	718-824, gnl\|echTel1\|scaffold_185066 (9856-10154)
	718-824, gnl\|hg17\|chr16 (73820447-73820728)
	718-824, gnl\|Hg17\|chr16 (73820740-73820473)
	718-824, gnl\|loxAfr1\|scaffold_156258 (4750-4452)
	718-824, gnl\|mm7\|chr8 (110310534-110310740)
	718-824, gnl\|Mm7\|chr8 (110310749-110310559)
	718-824, gnl\|panTro1\|chr18 (68217867-68218156)
	718-824, gnl\|rheMac2\|chr20 (73332846-73333134)
	718-824, gnl\|rn3\|chr19 (41651075-41651279)