Ss1.1-Pig4-TMW8010A21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGATGCACTCCAGAAATTGACTGAAATTCTCAATTTAAATGGAGAAGTAGCTTGCCAGG ACTCAGGTCATCCTGCCAAACACAGGAACACATCTGCAGTCCTAGGCTGCCTGGCTGAGA AACTAGCAGGTCCTGCAAGTATAGGTTTACTTAGCCCAGGAATACTGGAATATTTGCTAC AGTGTCTGAAATTACAGTCCCACCCCACAGTCATGCTTTTTGCACTTATCGCACTGGAAA AGTTTGCACAGACAAGTGAAAATAAATTGACTATATCTGAATCCAGTATTAGCGACCGGC TTATCACCTTGGAGTCCTGGGCTGATGATCCTGATTATCTGAAACGTCAAGTTGGTTTCT GTGCCCAGTGGAGCTTGGACAATCTGTTTTTAAAAGAAGGTAGGCAGCTGACCTATGAGA AAGTGGACTTGAATAGCATCAGGGCCATGCTGAACAGCAATGATGTCAGCGAGTACCTGA AGATCTCGCCTCACGGCTTGGAGGCTCGCTGTGATGCCTCCTCTTTTGAAAGTGTGCGTT GTACCTTTTGTGTGGATGCTGGGGTGTGGTACTACGAAGTAACAGTGGTCACTTCTGGGG TCATGCAGATCGGCTGGGCCACACGAGACAGCAAATTTCTCAATCACGAAGGCTACGGCA TTGGGGACGACGAATACTCCTGTGCATACGATGGCTGCCGGCAGCTGATTTGGTACAACG CCAGAAGTAAGCCTCACCTGCACCCCTGCTGGAAAGAAGGAGACACAGTAGGATTTCTGT TAGACTTGAATGAAAAGCAAATGATCTTCTTTTTAAATGGCAACCAGCTGCCTCCAGAGA AGCAAGTCTTTTCATCTACTGTATCTGGATTTTTTGCTGCAGCTAGTTTCATGTCATATC AACAATGTGAGTTCAATTTTGGAGCAAAACCATTCAAATATCCACCATCTATGAAATTTA GCACTTTTAATGACTACGCCTTCCTAACAGCTGAAGAGAAAATCATTTTGCCAAGGCACA GGCGTCTTGCTCTGCTGAAGCAAGTCAGTATCCGGGAAAACTGCTGCTCCCTGTGTTGCG ATGAGGTAGCAGACACACAGTTGAAGCCATGCGGACATAGTGACCTGTGCATGGATTGTG CCTTGCAACTGGAGACCTGCCCATTGTGTCGTAAAGAAATAGTGTTTAGAGTCAGACAGA TTTTTCATATTTCTTGACACATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGATGCACTCCAGAAATTGACTGAAATTCTCAATTTAAATGGAGAAGTAGCTTGCCAGG ACTCAGGTCATCCTGCCAAACACAGGAACACATCTGCAGTCCTAGGCTGCCTGGCTGAGA AACTAGCAGGTCCTGCAAGTATAGGTTTACTTAGCCCAGGAATACTGGAATATTTGCTAC AGTGTCTGAAATTACAGTCCCACCCCACAGTCATGCTTTTTGCACTTATCGCACTGGAAA AGTTTGCACAGACAAGTGAAAATAAATTGACTATATCTGAATCCAGTATTAGCGACCGGC TTATCACCTTGGAGTCCTGGGCTGATGATCCTGATTATCTGAAACGTCAAGTTGGTTTCT GTGCCCAGTGGAGCTTGGACAATCTGTTTTTAAAAGAAGGTAGGCAGCTGACCTATGAGA AAGTGGACTTGAATAGCATCAGGGCCATGCTGAACAGCAATGATGTCAGCGAGTACCTGA AGATCTCGCCTCACGGCTTGGAGGCTCGCTGTGATGCCTCCTCTTTTGAAAGTGTGCGTT GTACCTTTTGTGTGGATGCTGGGGTGTGGTACTACGAAGTAACAGTGGTCACTTCTGGGG TCATGCAGATCGGCTGGGCCACACGAGACAGCAAATTTCTCAATCACGAAGGCTACGGCA TTGGGGACGACGAATACTCCTGTGCATACGATGGCTGCCGGCAGCTGATTTGGTACAACG CCAGAAGTAAGCCTCACCTGCACCCCTGCTGGAAAGAAGGAGACACAGTAGGATTTCTGT TAGACTTGAATGAAAAGCAAATGATCTTCTTTTTAAATGGCAACCAGCTGCCTCCAGAGA AGCAAGTCTTTTCATCTACTGTATCTGGATTTTTTGCTGCAGCTAGTTTCATGTCATATC AACAATGTGAGTTCAATTTTGGAGCAAAACCATTCAAATATCCACCATCTATGAAATTTA GCACTTTTAATGACTACGCCTTCCTAACAGCTGAAGAGAAAATCATTTTGCCAAGGCACA GGCGTCTTGCTCTGCTGAAGCAAGTCAGTATCCGGGAAAACTGCTGCTCCCTGTGTTGCG ATGAGGTAGCAGACACACAGTTGAAGCCATGCGGACATAGTGACCTGTGCATGGATTGTG CCTTGCAACTGGAGACCTGCCCATTGTGTCGTAAAGAAATAGTGTTTAGAGTCAGACAGA TTTTTCATATTTCTTGACACATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-385, - strand, RNAz p=0.981593 | |
| 545-648, - strand, RNAz p=0.51389 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-385, - strand, RNAz p=0.981593 | |
| 545-648, - strand, RNAz p=0.51389 |
| Aligned organism(s): 108 entry(ies) | More info |
| Aligned organism(s): 108 entry(ies) | Help | Less info |
| 3-131, gnl|bosTau2|chr18 (24185672-24185544) | |
| 3-131, gnl|canFam2|chr2 (62045236-62045070) | |
| 3-131, gnl|danRer3|chr18 (18910411-18910559) | |
| 3-131, gnl|echTel1|scaffold_317138 (44181-44014) | |
| 3-131, gnl|fr1|chrUn (139191599-139191452) | |
| 3-131, gnl|galGal2|chr11 (717465-717614) | |
| 3-131, gnl|hg17|chr16 (55804367-55804533) | |
| 3-131, gnl|Hg17|chr16 (55804385-55804513) | |
| 3-131, gnl|loxAfr1|scaffold_2911 (48848-49015) | |
| 3-131, gnl|mm7|chr8 (93221083-93221240) | |
| 3-131, gnl|Mm7|chr8 (93221100-93221228) | |
| 3-131, gnl|monDom2|scaffold_35 (24062671-24062822) | |
| 3-131, gnl|oryCun1|scaffold_214381 (89897-90064) | |
| 3-131, gnl|panTro1|chr18 (49905314-49905480) | |
| 3-131, gnl|rn3|chr19 (10822997-10822840) | |
| 3-131, gnl|tetNig1|chr13 (942592-942415) | |
| 3-131, gnl|xenTro1|scaffold_167 (252053-252204) | |
| 242-385, gnl|bosTau2|chr18 (24181622-24181479) | |
| 242-385, gnl|canFam2|chr2 (62041676-62041539) | |
| 242-385, gnl|danRer3|chr18 (18913345-18913483) | |
| 242-385, gnl|dasNov1|scaffold_17514 (9404-9267) | |
| 242-385, gnl|echTel1|scaffold_317138 (40072-39934) | |
| 242-385, gnl|fr1|chrUn (139190318-139190183) | |
| 242-385, gnl|galGal2|chr11 (720631-720783) | |
| 242-385, gnl|hg17|chr16 (55808291-55808428) | |
| 242-385, gnl|Hg17|chr16 (55808303-55808446) | |
| 242-385, gnl|loxAfr1|scaffold_2911 (52505-52641) | |
| 242-385, gnl|mm7|chr8 (93225643-93225779) | |
| 242-385, gnl|Mm7|chr8 (93225654-93225797) | |
| 242-385, gnl|monDom2|scaffold_35 (24067269-24067406) | |
| 242-385, gnl|oryCun1|scaffold_214381 (94279-94414) | |
| 242-385, gnl|panTro1|chr18 (49909246-49909383) | |
| 242-385, gnl|rheMac2|chr20 (55578000-55578137) | |
| 242-385, gnl|rn3|chr19 (10818692-10818556) | |
| 242-385, gnl|tetNig1|chr13 (941438-941316) | |
| 242-385, gnl|xenTro1|scaffold_167 (256106-256238) | |
| 502-648, gnl|bosTau2|chr18 (24179559-24179413) | |
| 502-648, gnl|canFam2|chr2 (62039362-62039154) | |
| 502-648, gnl|danRer3|chr18 (18914181-18914363) | |
| 502-648, gnl|dasNov1|scaffold_17514 (7042-6834) | |
| 502-648, gnl|echTel1|scaffold_317138 (38048-37845) | |
| 502-648, gnl|fr1|chrUn (139189884-139189720) | |
| 502-648, gnl|galGal2|chr11 (722349-722538) | |
| 502-648, gnl|hg17|chr16 (55812648-55812856) | |
| 502-648, gnl|Hg17|chr16 (55812683-55812829) | |
| 502-648, gnl|loxAfr1|scaffold_2911 (54693-54891) | |
| 502-648, gnl|mm7|chr8 (93228531-93228734) | |
| 502-648, gnl|Mm7|chr8 (93228565-93228711) | |
| 502-648, gnl|monDom2|scaffold_35 (24069607-24069816) | |
| 502-648, gnl|panTro1|chr18 (49913279-49913487) | |
| 502-648, gnl|rheMac2|chr20 (55582054-55582262) | |
| 502-648, gnl|rn3|chr19 (10815804-10815601) | |
| 502-648, gnl|tetNig1|chr13 (941028-940880) | |
| 502-648, gnl|xenTro1|scaffold_167 (258989-259176) | |
| 758-862, gnl|bosTau2|chr18 (24173503-24173399) | |
| 758-862, gnl|canFam2|chr2 (62030695-62030536) | |
| 758-862, gnl|danRer3|chr18 (18916478-18916622) | |
| 758-862, gnl|dasNov1|scaffold_71236 (8466-8309) | |
| 758-862, gnl|echTel1|scaffold_240834 (251-110) | |
| 758-862, gnl|fr1|chrUn (139189310-139189182) | |
| 758-862, gnl|galGal2|chr11 (726103-726241) | |
| 758-862, gnl|hg17|chr16 (55822075-55822233) | |
| 758-862, gnl|Hg17|chr16 (55822122-55822226) | |
| 758-862, gnl|loxAfr1|scaffold_2911 (61812-61970) | |
| 758-862, gnl|mm7|chr8 (93238764-93238906) | |
| 758-862, gnl|Mm7|chr8 (93238795-93238899) | |
| 758-862, gnl|monDom2|scaffold_35 (24094983-24095154) | |
| 758-862, gnl|oryCun1|scaffold_210892 (16415-16268) | |
| 758-862, gnl|panTro1|chr18 (49922778-49922936) | |
| 758-862, gnl|rheMac2|chr20 (55591454-55591612) | |
| 758-862, gnl|rn3|chr19 (10807769-10807627) | |
| 758-862, gnl|tetNig1|chr13 (940127-940013) | |
| 758-862, gnl|xenTro1|scaffold_167 (261441-261591) | |
| 863-1016, gnl|bosTau2|chr18 (24173037-24172884) | |
| 863-1016, gnl|canFam2|chr2 (62030209-62030039) | |
| 863-1016, gnl|danRer3|chr18 (18916692-18916848) | |
| 863-1016, gnl|dasNov1|scaffold_71236 (7980-7836) | |
| 863-1016, gnl|echTel1|scaffold_126451 (180-350) | |
| 863-1016, gnl|fr1|chrUn (139189073-139188903) | |
| 863-1016, gnl|galGal2|chr11 (727529-727687) | |
| 863-1016, gnl|hg17|chr16 (55822579-55822749) | |
| 863-1016, gnl|Hg17|chr16 (55822580-55822733) | |
| 863-1016, gnl|loxAfr1|scaffold_2911 (62346-62519) | |
| 863-1016, gnl|mm7|chr8 (93239238-93239406) | |
| 863-1016, gnl|Mm7|chr8 (93239239-93239392) | |
| 863-1016, gnl|monDom2|scaffold_35 (24097011-24097180) | |
| 863-1016, gnl|oryCun1|scaffold_210892 (15916-15746) | |
| 863-1016, gnl|panTro1|chr18 (49923280-49923450) | |
| 863-1016, gnl|rheMac2|chr20 (55591956-55592126) | |
| 863-1016, gnl|rn3|chr19 (10807287-10807119) | |
| 863-1016, gnl|tetNig1|chr13 (939934-939770) | |
| 863-1016, gnl|xenTro1|scaffold_167 (266183-266344) | |
| 1119-1224, gnl|bosTau2|chr18 (24168431-24168326) | |
| 1119-1224, gnl|canFam2|chr2 (62021236-62021073) | |
| 1119-1224, gnl|danRer3|chr18 (18921773-18921928) | |
| 1119-1224, gnl|fr1|chrUn (139188456-139188336) | |
| 1119-1224, gnl|galGal2|chr11 (731055-731212) | |
| 1119-1224, gnl|hg17|chr16 (55830248-55830411) | |
| 1119-1224, gnl|Hg17|chr16 (55830290-55830395) | |
| 1119-1224, gnl|mm7|chr8 (93247704-93247867) | |
| 1119-1224, gnl|Mm7|chr8 (93247746-93247851) | |
| 1119-1224, gnl|monDom2|scaffold_35 (24110527-24110696) | |
| 1119-1224, gnl|oryCun1|scaffold_210892 (8251-8089) | |
| 1119-1224, gnl|panTro1|chr18 (49931027-49931190) | |
| 1119-1224, gnl|rheMac2|chr20 (55598095-55598258) | |
| 1119-1224, gnl|rn3|chr19 (10799210-10799055) | |
| 1119-1224, gnl|tetNig1|chr13 (939143-939025) | |
| 1119-1224, gnl|xenTro1|scaffold_167 (269078-269208) |
| Aligned organism(s): 108 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-131, gnl|bosTau2|chr18 (24185672-24185544) | |
| 3-131, gnl|canFam2|chr2 (62045236-62045070) | |
| 3-131, gnl|danRer3|chr18 (18910411-18910559) | |
| 3-131, gnl|echTel1|scaffold_317138 (44181-44014) | |
| 3-131, gnl|fr1|chrUn (139191599-139191452) | |
| 3-131, gnl|galGal2|chr11 (717465-717614) | |
| 3-131, gnl|hg17|chr16 (55804367-55804533) | |
| 3-131, gnl|Hg17|chr16 (55804385-55804513) | |
| 3-131, gnl|loxAfr1|scaffold_2911 (48848-49015) | |
| 3-131, gnl|mm7|chr8 (93221083-93221240) | |
| 3-131, gnl|Mm7|chr8 (93221100-93221228) | |
| 3-131, gnl|monDom2|scaffold_35 (24062671-24062822) | |
| 3-131, gnl|oryCun1|scaffold_214381 (89897-90064) | |
| 3-131, gnl|panTro1|chr18 (49905314-49905480) | |
| 3-131, gnl|rn3|chr19 (10822997-10822840) | |
| 3-131, gnl|tetNig1|chr13 (942592-942415) | |
| 3-131, gnl|xenTro1|scaffold_167 (252053-252204) | |
| 242-385, gnl|bosTau2|chr18 (24181622-24181479) | |
| 242-385, gnl|canFam2|chr2 (62041676-62041539) | |
| 242-385, gnl|danRer3|chr18 (18913345-18913483) | |
| 242-385, gnl|dasNov1|scaffold_17514 (9404-9267) | |
| 242-385, gnl|echTel1|scaffold_317138 (40072-39934) | |
| 242-385, gnl|fr1|chrUn (139190318-139190183) | |
| 242-385, gnl|galGal2|chr11 (720631-720783) | |
| 242-385, gnl|hg17|chr16 (55808291-55808428) | |
| 242-385, gnl|Hg17|chr16 (55808303-55808446) | |
| 242-385, gnl|loxAfr1|scaffold_2911 (52505-52641) | |
| 242-385, gnl|mm7|chr8 (93225643-93225779) | |
| 242-385, gnl|Mm7|chr8 (93225654-93225797) | |
| 242-385, gnl|monDom2|scaffold_35 (24067269-24067406) | |
| 242-385, gnl|oryCun1|scaffold_214381 (94279-94414) | |
| 242-385, gnl|panTro1|chr18 (49909246-49909383) | |
| 242-385, gnl|rheMac2|chr20 (55578000-55578137) | |
| 242-385, gnl|rn3|chr19 (10818692-10818556) | |
| 242-385, gnl|tetNig1|chr13 (941438-941316) | |
| 242-385, gnl|xenTro1|scaffold_167 (256106-256238) | |
| 502-648, gnl|bosTau2|chr18 (24179559-24179413) | |
| 502-648, gnl|canFam2|chr2 (62039362-62039154) | |
| 502-648, gnl|danRer3|chr18 (18914181-18914363) | |
| 502-648, gnl|dasNov1|scaffold_17514 (7042-6834) | |
| 502-648, gnl|echTel1|scaffold_317138 (38048-37845) | |
| 502-648, gnl|fr1|chrUn (139189884-139189720) | |
| 502-648, gnl|galGal2|chr11 (722349-722538) | |
| 502-648, gnl|hg17|chr16 (55812648-55812856) | |
| 502-648, gnl|Hg17|chr16 (55812683-55812829) | |
| 502-648, gnl|loxAfr1|scaffold_2911 (54693-54891) | |
| 502-648, gnl|mm7|chr8 (93228531-93228734) | |
| 502-648, gnl|Mm7|chr8 (93228565-93228711) | |
| 502-648, gnl|monDom2|scaffold_35 (24069607-24069816) | |
| 502-648, gnl|panTro1|chr18 (49913279-49913487) | |
| 502-648, gnl|rheMac2|chr20 (55582054-55582262) | |
| 502-648, gnl|rn3|chr19 (10815804-10815601) | |
| 502-648, gnl|tetNig1|chr13 (941028-940880) | |
| 502-648, gnl|xenTro1|scaffold_167 (258989-259176) | |
| 758-862, gnl|bosTau2|chr18 (24173503-24173399) | |
| 758-862, gnl|canFam2|chr2 (62030695-62030536) | |
| 758-862, gnl|danRer3|chr18 (18916478-18916622) | |
| 758-862, gnl|dasNov1|scaffold_71236 (8466-8309) | |
| 758-862, gnl|echTel1|scaffold_240834 (251-110) | |
| 758-862, gnl|fr1|chrUn (139189310-139189182) | |
| 758-862, gnl|galGal2|chr11 (726103-726241) | |
| 758-862, gnl|hg17|chr16 (55822075-55822233) | |
| 758-862, gnl|Hg17|chr16 (55822122-55822226) | |
| 758-862, gnl|loxAfr1|scaffold_2911 (61812-61970) | |
| 758-862, gnl|mm7|chr8 (93238764-93238906) | |
| 758-862, gnl|Mm7|chr8 (93238795-93238899) | |
| 758-862, gnl|monDom2|scaffold_35 (24094983-24095154) | |
| 758-862, gnl|oryCun1|scaffold_210892 (16415-16268) | |
| 758-862, gnl|panTro1|chr18 (49922778-49922936) | |
| 758-862, gnl|rheMac2|chr20 (55591454-55591612) | |
| 758-862, gnl|rn3|chr19 (10807769-10807627) | |
| 758-862, gnl|tetNig1|chr13 (940127-940013) | |
| 758-862, gnl|xenTro1|scaffold_167 (261441-261591) | |
| 863-1016, gnl|bosTau2|chr18 (24173037-24172884) | |
| 863-1016, gnl|canFam2|chr2 (62030209-62030039) | |
| 863-1016, gnl|danRer3|chr18 (18916692-18916848) | |
| 863-1016, gnl|dasNov1|scaffold_71236 (7980-7836) | |
| 863-1016, gnl|echTel1|scaffold_126451 (180-350) | |
| 863-1016, gnl|fr1|chrUn (139189073-139188903) | |
| 863-1016, gnl|galGal2|chr11 (727529-727687) | |
| 863-1016, gnl|hg17|chr16 (55822579-55822749) | |
| 863-1016, gnl|Hg17|chr16 (55822580-55822733) | |
| 863-1016, gnl|loxAfr1|scaffold_2911 (62346-62519) | |
| 863-1016, gnl|mm7|chr8 (93239238-93239406) | |
| 863-1016, gnl|Mm7|chr8 (93239239-93239392) | |
| 863-1016, gnl|monDom2|scaffold_35 (24097011-24097180) | |
| 863-1016, gnl|oryCun1|scaffold_210892 (15916-15746) | |
| 863-1016, gnl|panTro1|chr18 (49923280-49923450) | |
| 863-1016, gnl|rheMac2|chr20 (55591956-55592126) | |
| 863-1016, gnl|rn3|chr19 (10807287-10807119) | |
| 863-1016, gnl|tetNig1|chr13 (939934-939770) | |
| 863-1016, gnl|xenTro1|scaffold_167 (266183-266344) | |
| 1119-1224, gnl|bosTau2|chr18 (24168431-24168326) | |
| 1119-1224, gnl|canFam2|chr2 (62021236-62021073) | |
| 1119-1224, gnl|danRer3|chr18 (18921773-18921928) | |
| 1119-1224, gnl|fr1|chrUn (139188456-139188336) | |
| 1119-1224, gnl|galGal2|chr11 (731055-731212) | |
| 1119-1224, gnl|hg17|chr16 (55830248-55830411) | |
| 1119-1224, gnl|Hg17|chr16 (55830290-55830395) | |
| 1119-1224, gnl|mm7|chr8 (93247704-93247867) | |
| 1119-1224, gnl|Mm7|chr8 (93247746-93247851) | |
| 1119-1224, gnl|monDom2|scaffold_35 (24110527-24110696) | |
| 1119-1224, gnl|oryCun1|scaffold_210892 (8251-8089) | |
| 1119-1224, gnl|panTro1|chr18 (49931027-49931190) | |
| 1119-1224, gnl|rheMac2|chr20 (55598095-55598258) | |
| 1119-1224, gnl|rn3|chr19 (10799210-10799055) | |
| 1119-1224, gnl|tetNig1|chr13 (939143-939025) | |
| 1119-1224, gnl|xenTro1|scaffold_167 (269078-269208) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eli (0.151814) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.151814) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) |