Ss1.1-Pig4-TMW8010F08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCGTCTTCTGGTAAATCCATTTCTGAAGGCCACTCGTGGCATGTTCCTGACAGCCCTT CCTGTGCCAAGCGTCGCTACAAACAAATGGGAGGTGATAGGAATGTACAGCCCATTGCCT CCGATTCCAGCACCCCTTACAAACCAGCCTATGTAAAGCTGCTGCTGTCCCCAGTCACCG GTGGTGGCAGAGAGGATCCAAGAGCCCTGAATGGCAACCCCCGGCAGGAAGATGAGGGCT TGGCTCCCCTCACCAGGCAGCAGTCAGGTGACTTTGATAGATGGGAGCTGATCCAAGCAC AAGAACTTCACAAGAAACTCAGAATAAAGCAAAACTTGCAGCAGCTTAACTCCAGTATCA GCGACATTACCACTTGGCTGGAAAAAACTGAAGCAGAGTTGGAGACATTAAAGTTGGCAG AGCCTCCCTCTGATATGCAGGAGATAGAACTCCGAGTGAAGAGGCTGAAGGAGATAGTAA AAGCCTTTAACACCCACAAGGCTTTGCTGGTCTCTGTCAATGTGAGCAGCAAGGAATTTC TGCAGACCGAGAGTGCCGACTCCAAAGAGCTCCAAGATCGAGTCAGCCAGCTGAGCCTGC GCTGGGACGCGGCCCAGGAGGCGGTGGAGAGCTGGAGGGAGGGCTTACGACAGTCGCTCA TGCAGTGCCAGGATTTCCACCACTTGAGTCAAAATCTGCTGCTGTGGTTAGCGAGTGCCG AGAGCCAGAGGCAGAAGGCTCACATCCGTGACCCAGAGGCGAACCATCAGGCTCTCCTGG TGTGTCGGGAAGAACTCACGCAACTGGAAAAGGAGCTTGTGGCACGTCAACCTCAAGTAA GTTCCTTACGAGAGATTTCCAACAGCCTGCTTACCAAGGGGCATGGGGAAGACTACATTG AGGCTGAAGAGAAGGTCCATGTGATTGAGAAGAAATTCAAACAGTTATTGGAGCAAGTGT CCCAGGACTTAATGTCCCTGGAGGGGAGCCAGAACCTGGGCTCATCCCTGCCTAGCTTGG ATGAGGCCAACCCTGAAGAGCCTGTAGCAGCATCGTCACCAGCATCTGAAGCCAAGCTCA GAGCAGAGAGAACTAGAAGAGACAAGAACAGGACAGACAGCAGGGTGCCCAGCTCCACCC ACCCCAACAGCTCGAGGGCCTCACGCTCCTTCCTCTCGAGGGTGATCTGGGCGGCGCTGC CCCTCCAGCTGCTGCTTCTGCTGCTGCTGCTCCTGGCCTGCCTGCTGCCCGCCTCCGTGG AGGACTACAGCTGGCCCTCGGCCAATAACTTTGCCAGGTCCTTCTACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCGTCTTCTGGTAAATCCATTTCTGAAGGCCACTCGTGGCATGTTCCTGACAGCCCTT CCTGTGCCAAGCGTCGCTACAAACAAATGGGAGGTGATAGGAATGTACAGCCCATTGCCT CCGATTCCAGCACCCCTTACAAACCAGCCTATGTAAAGCTGCTGCTGTCCCCAGTCACCG GTGGTGGCAGAGAGGATCCAAGAGCCCTGAATGGCAACCCCCGGCAGGAAGATGAGGGCT TGGCTCCCCTCACCAGGCAGCAGTCAGGTGACTTTGATAGATGGGAGCTGATCCAAGCAC AAGAACTTCACAAGAAACTCAGAATAAAGCAAAACTTGCAGCAGCTTAACTCCAGTATCA GCGACATTACCACTTGGCTGGAAAAAACTGAAGCAGAGTTGGAGACATTAAAGTTGGCAG AGCCTCCCTCTGATATGCAGGAGATAGAACTCCGAGTGAAGAGGCTGAAGGAGATAGTAA AAGCCTTTAACACCCACAAGGCTTTGCTGGTCTCTGTCAATGTGAGCAGCAAGGAATTTC TGCAGACCGAGAGTGCCGACTCCAAAGAGCTCCAAGATCGAGTCAGCCAGCTGAGCCTGC GCTGGGACGCGGCCCAGGAGGCGGTGGAGAGCTGGAGGGAGGGCTTACGACAGTCGCTCA TGCAGTGCCAGGATTTCCACCACTTGAGTCAAAATCTGCTGCTGTGGTTAGCGAGTGCCG AGAGCCAGAGGCAGAAGGCTCACATCCGTGACCCAGAGGCGAACCATCAGGCTCTCCTGG TGTGTCGGGAAGAACTCACGCAACTGGAAAAGGAGCTTGTGGCACGTCAACCTCAAGTAA GTTCCTTACGAGAGATTTCCAACAGCCTGCTTACCAAGGGGCATGGGGAAGACTACATTG AGGCTGAAGAGAAGGTCCATGTGATTGAGAAGAAATTCAAACAGTTATTGGAGCAAGTGT CCCAGGACTTAATGTCCCTGGAGGGGAGCCAGAACCTGGGCTCATCCCTGCCTAGCTTGG ATGAGGCCAACCCTGAAGAGCCTGTAGCAGCATCGTCACCAGCATCTGAAGCCAAGCTCA GAGCAGAGAGAACTAGAAGAGACAAGAACAGGACAGACAGCAGGGTGCCCAGCTCCACCC ACCCCAACAGCTCGAGGGCCTCACGCTCCTTCCTCTCGAGGGTGATCTGGGCGGCGCTGC CCCTCCAGCTGCTGCTTCTGCTGCTGCTGCTCCTGGCCTGCCTGCTGCCCGCCTCCGTGG AGGACTACAGCTGGCCCTCGGCCAATAACTTTGCCAGGTCCTTCTACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 345-460, - strand, RNAz p=0.568952 | |
| 1191-1308, - strand, RNAz p=0.965387 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 345-460, - strand, RNAz p=0.568952 | |
| 1191-1308, - strand, RNAz p=0.965387 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 8-156, gnl|bosTau2|chr10 (51874984-51874836) | |
| 8-156, gnl|canFam2|chr8 (41663438-41663667) | |
| 8-156, gnl|dasNov1|scaffold_2642 (77811-77597) | |
| 8-156, gnl|echTel1|scaffold_281046 (37419-37230) | |
| 8-156, gnl|galGal2|chr5 (49819750-49819528) | |
| 8-156, gnl|hg17|chr14 (63752684-63752899) | |
| 8-156, gnl|Hg17|chr14 (63752714-63752862) | |
| 8-156, gnl|loxAfr1|scaffold_2158 (102996-103209) | |
| 8-156, gnl|mm7|chr12 (74059512-74059737) | |
| 8-156, gnl|Mm7|chr12 (74059558-74059706) | |
| 8-156, gnl|monDom2|scaffold_8 (77823188-77823379) | |
| 8-156, gnl|oryCun1|scaffold_122418 (7332-7119) | |
| 8-156, gnl|panTro1|chr15 (63319161-63319376) | |
| 8-156, gnl|rheMac2|chr7 (127237416-127237628) | |
| 8-156, gnl|rn3|chr6 (98673603-98673850) | |
| 265-474, gnl|bosTau2|chr10 (51871146-51870937) | |
| 265-474, gnl|canFam2|chr8 (41666642-41666834) | |
| 265-474, gnl|danRer3|chr20 (24686241-24686040) | |
| 265-474, gnl|dasNov1|scaffold_2642 (74533-74341) | |
| 265-474, gnl|echTel1|scaffold_281046 (33856-33664) | |
| 265-474, gnl|fr1|chrUn (165891108-165891273) | |
| 265-474, gnl|galGal2|chr5 (49817149-49816947) | |
| 265-474, gnl|hg17|chr14 (63755659-63755852) | |
| 265-474, gnl|Hg17|chr14 (63755676-63755885) | |
| 265-474, gnl|loxAfr1|scaffold_2158 (105999-106191) | |
| 265-474, gnl|mm7|chr12 (74062299-74062491) | |
| 265-474, gnl|Mm7|chr12 (74062315-74062524) | |
| 265-474, gnl|monDom2|scaffold_8 (77828670-77828875) | |
| 265-474, gnl|oryCun1|scaffold_122418 (3795-3598) | |
| 265-474, gnl|panTro1|chr15 (63322129-63322322) | |
| 265-474, gnl|rheMac2|chr7 (127240677-127240870) | |
| 265-474, gnl|rn3|chr6 (98676474-98676666) | |
| 265-474, gnl|tetNig1|chr10 (12619324-12619147) | |
| 265-474, gnl|xenTro1|scaffold_34 (225609-225793) | |
| 670-797, gnl|bosTau2|chr10 (51868778-51868651) | |
| 670-797, gnl|Hg17|chr14 (63758045-63758172) | |
| 670-797, gnl|Mm7|chr12 (74064558-74064685) | |
| 800-992, gnl|bosTau2|chr10 (51867650-51867458) | |
| 800-992, gnl|Hg17|chr14 (63759659-63759851) | |
| 800-992, gnl|Mm7|chr12 (74066054-74066246) | |
| 1121-1308, gnl|bosTau2|chr10 (51865670-51865483) | |
| 1121-1308, gnl|Hg17|chr14 (63761787-63761959) | |
| 1121-1308, gnl|Mm7|chr12 (74068390-74068577) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-156, gnl|bosTau2|chr10 (51874984-51874836) | |
| 8-156, gnl|canFam2|chr8 (41663438-41663667) | |
| 8-156, gnl|dasNov1|scaffold_2642 (77811-77597) | |
| 8-156, gnl|echTel1|scaffold_281046 (37419-37230) | |
| 8-156, gnl|galGal2|chr5 (49819750-49819528) | |
| 8-156, gnl|hg17|chr14 (63752684-63752899) | |
| 8-156, gnl|Hg17|chr14 (63752714-63752862) | |
| 8-156, gnl|loxAfr1|scaffold_2158 (102996-103209) | |
| 8-156, gnl|mm7|chr12 (74059512-74059737) | |
| 8-156, gnl|Mm7|chr12 (74059558-74059706) | |
| 8-156, gnl|monDom2|scaffold_8 (77823188-77823379) | |
| 8-156, gnl|oryCun1|scaffold_122418 (7332-7119) | |
| 8-156, gnl|panTro1|chr15 (63319161-63319376) | |
| 8-156, gnl|rheMac2|chr7 (127237416-127237628) | |
| 8-156, gnl|rn3|chr6 (98673603-98673850) | |
| 265-474, gnl|bosTau2|chr10 (51871146-51870937) | |
| 265-474, gnl|canFam2|chr8 (41666642-41666834) | |
| 265-474, gnl|danRer3|chr20 (24686241-24686040) | |
| 265-474, gnl|dasNov1|scaffold_2642 (74533-74341) | |
| 265-474, gnl|echTel1|scaffold_281046 (33856-33664) | |
| 265-474, gnl|fr1|chrUn (165891108-165891273) | |
| 265-474, gnl|galGal2|chr5 (49817149-49816947) | |
| 265-474, gnl|hg17|chr14 (63755659-63755852) | |
| 265-474, gnl|Hg17|chr14 (63755676-63755885) | |
| 265-474, gnl|loxAfr1|scaffold_2158 (105999-106191) | |
| 265-474, gnl|mm7|chr12 (74062299-74062491) | |
| 265-474, gnl|Mm7|chr12 (74062315-74062524) | |
| 265-474, gnl|monDom2|scaffold_8 (77828670-77828875) | |
| 265-474, gnl|oryCun1|scaffold_122418 (3795-3598) | |
| 265-474, gnl|panTro1|chr15 (63322129-63322322) | |
| 265-474, gnl|rheMac2|chr7 (127240677-127240870) | |
| 265-474, gnl|rn3|chr6 (98676474-98676666) | |
| 265-474, gnl|tetNig1|chr10 (12619324-12619147) | |
| 265-474, gnl|xenTro1|scaffold_34 (225609-225793) | |
| 670-797, gnl|bosTau2|chr10 (51868778-51868651) | |
| 670-797, gnl|Hg17|chr14 (63758045-63758172) | |
| 670-797, gnl|Mm7|chr12 (74064558-74064685) | |
| 800-992, gnl|bosTau2|chr10 (51867650-51867458) | |
| 800-992, gnl|Hg17|chr14 (63759659-63759851) | |
| 800-992, gnl|Mm7|chr12 (74066054-74066246) | |
| 1121-1308, gnl|bosTau2|chr10 (51865670-51865483) | |
| 1121-1308, gnl|Hg17|chr14 (63761787-63761959) | |
| 1121-1308, gnl|Mm7|chr12 (74068390-74068577) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |