Non-Coding RNA Search

Ss1.1-Pig4-TMW8010G01.5

Sequence:


               
               TTTGCTGCTCTTCTGGCTCAGTCCGTTAATCAGGGTTTTGAAGCCGTGTATCAGCTAACT
AGAATGTGCACCATAAGAATGAGTTTTGTGAAAGGCTGGGGAGCAGAATACCGAAGGCAG
ACAGTAACAAGCACTCCTTGCTGGATTGAACTTCATCTGAATGGACCTCTACAGTGGTTG
GACAAAGTATTAACTCAGATGGGATCCCCTTCAGTGCGTTGCTCAAGCATGTCATAAAAG
CCTCGTCACCAATCAAGTCCCATCAAAAGACTTAATGTACCAACTCTTCTGTCATAGTAT
TTGTGTGTGGTCCCCGTGGACTGTTTATGTTTACTGTCCAAAACTTCAAGAGAGAAAACA
GCACTTGAGGTCTCATCAATTAAAGCACCTTGTGGAATCGGTTTCCTATGTTCAGATATT
AGGTGGGAAAATTAGTGTCTAGAAATACCCTCCCATAAAGGAGGAAGAGAAGATTTTAAA
GACTTACTGATGTCTTGTTGGGCATAAAACTGGGTGTCCCGAAGGTTTATTAATAACAGT
AGTAGTTATGTGTACAGGTAATGTATCAAGATCCAGTATCACAGTATTGTGCTGTTTATA
CATTTTTAGTTTGCATAAATTAGGTGTGTGTGCTGCTTCTTGATTTAGGCAAGCCTTTAT
AAAGTTACAGTACCTAATCTGTTATTCCCACTTCTTCGTTATTTTTGTGTGTCTTTTTTA
ATATATAATATATATCAAGATTTTCAAATTATCATTTAGAAGCAGATTTCCCTTGTAGAA
AAACTAATTTTTCTGCCTTTTACCAAAAATAAACTCATGGGGGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCTGCTCTTCTGGCTCAGTCCGTTAATCAGGGTTTTGAAGCCGTGTATCAGCTAACT
AGAATGTGCACCATAAGAATGAGTTTTGTGAAAGGCTGGGGAGCAGAATACCGAAGGCAG
ACAGTAACAAGCACTCCTTGCTGGATTGAACTTCATCTGAATGGACCTCTACAGTGGTTG
GACAAAGTATTAACTCAGATGGGATCCCCTTCAGTGCGTTGCTCAAGCATGTCATAAAAG
CCTCGTCACCAATCAAGTCCCATCAAAAGACTTAATGTACCAACTCTTCTGTCATAGTAT
TTGTGTGTGGTCCCCGTGGACTGTTTATGTTTACTGTCCAAAACTTCAAGAGAGAAAACA
GCACTTGAGGTCTCATCAATTAAAGCACCTTGTGGAATCGGTTTCCTATGTTCAGATATT
AGGTGGGAAAATTAGTGTCTAGAAATACCCTCCCATAAAGGAGGAAGAGAAGATTTTAAA
GACTTACTGATGTCTTGTTGGGCATAAAACTGGGTGTCCCGAAGGTTTATTAATAACAGT
AGTAGTTATGTGTACAGGTAATGTATCAAGATCCAGTATCACAGTATTGTGCTGTTTATA
CATTTTTAGTTTGCATAAATTAGGTGTGTGTGCTGCTTCTTGATTTAGGCAAGCCTTTAT
AAAGTTACAGTACCTAATCTGTTATTCCCACTTCTTCGTTATTTTTGTGTGTCTTTTTTA
ATATATAATATATATCAAGATTTTCAAATTATCATTTAGAAGCAGATTTCCCTTGTAGAA
AAACTAATTTTTCTGCCTTTTACCAAAAATAAACTCATGGGGGAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-662, + strand, RNAz p=0.860217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-662, + strand, RNAz p=0.860217

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005901, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005901, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-828, gnl|bosTau2|chr24 (37804913-37805626)
               

               
               110-828, gnl|Hg17|chr18 (43622323-43621614)
               

               
               110-828, gnl|Mm7|chr18 (76698917-76699606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-828, gnl|bosTau2|chr24 (37804913-37805626)
               

               
               110-828, gnl|Hg17|chr18 (43622323-43621614)
               

               
               110-828, gnl|Mm7|chr18 (76698917-76699606)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ova (0.387397)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               isp (0.150376)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               isp (0.150376)

	110-828, gnl\|bosTau2\|chr24 (37804913-37805626)
	110-828, gnl\|Hg17\|chr18 (43622323-43621614)
	110-828, gnl\|Mm7\|chr18 (76698917-76699606)

	ova (0.387397)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	isp (0.150376)