Ss1.1-Pig4-TMW8010I02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGCTCCTCTGATGACCAGTACTGGGCCTTCTCTGACATCCAGACAGGACGCGTGCTCA CCAAGGTGACCGACGAGACCTCTGGCTGCTCTCTCACGTGTGCGCAGTTCCACCCGGATG GACTCATTTTCGGAACAGGCACCGGGGACTCTCAGATCAAGATCTGGGACTTGAAGGAGC GAACCAACGTGGCCAACTTCCCTGGCCACTCGGGCCCCATCACCAGCATTGCCTTCTCCG AGAATGGCTACTACCTGGCCACGGCGGCCGACGACTCCTCTGTCAAGCTCTGGGATCTGC GCAAACTGAAGAACTTCAAGACGTTGCAGCTGGATAACAACTTTGAGGTGAAGTCCCTCA TCTTTGACCAGAGTGGAACTTACCTGGCCCTGGGGGGCACAGATGTCCAGATCTACATCT GCAAACAGTGGACGGAGATTCTTCACTTTACAGAGCATAGCGGCGTGACCACAGGGGTGG CCTTCGGGCACCACGCCAAGTTCATTGCTTCAACAGGCATGGACAGGAGCCTCAAGTTCT ACAGCCTGTAGGCCCCGTTCCTCCTGACCGGAGCTGGGCCTCGTCTCAGTAGTGGGGTAG AGTTAGGGGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGCTCCTCTGATGACCAGTACTGGGCCTTCTCTGACATCCAGACAGGACGCGTGCTCA CCAAGGTGACCGACGAGACCTCTGGCTGCTCTCTCACGTGTGCGCAGTTCCACCCGGATG GACTCATTTTCGGAACAGGCACCGGGGACTCTCAGATCAAGATCTGGGACTTGAAGGAGC GAACCAACGTGGCCAACTTCCCTGGCCACTCGGGCCCCATCACCAGCATTGCCTTCTCCG AGAATGGCTACTACCTGGCCACGGCGGCCGACGACTCCTCTGTCAAGCTCTGGGATCTGC GCAAACTGAAGAACTTCAAGACGTTGCAGCTGGATAACAACTTTGAGGTGAAGTCCCTCA TCTTTGACCAGAGTGGAACTTACCTGGCCCTGGGGGGCACAGATGTCCAGATCTACATCT GCAAACAGTGGACGGAGATTCTTCACTTTACAGAGCATAGCGGCGTGACCACAGGGGTGG CCTTCGGGCACCACGCCAAGTTCATTGCTTCAACAGGCATGGACAGGAGCCTCAAGTTCT ACAGCCTGTAGGCCCCGTTCCTCCTGACCGGAGCTGGGCCTCGTCTCAGTAGTGGGGTAG AGTTAGGGGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 507-612, - strand, RNAz p=0.705201 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 507-612, - strand, RNAz p=0.705201 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 175-349, gnl|bosTau2|chr29 (34911805-34911979) | |
| 175-349, gnl|Hg17|chr11 (60422321-60422147) | |
| 175-349, gnl|Mm7|chr19 (10583414-10583588) | |
| 443-612, gnl|bosTau2|chr29 (34913615-34913783) | |
| 443-612, gnl|canFam2|chr1 (14530286-14530034) | |
| 443-612, gnl|canFam2|chr18 (58429466-58429745) | |
| 443-612, gnl|dasNov1|scaffold_138033 (3693-3438) | |
| 443-612, gnl|dasNov1|scaffold_138033 (3450-3719) | |
| 443-612, gnl|echTel1|scaffold_160213 (7806-7567) | |
| 443-612, gnl|echTel1|scaffold_160213 (7585-7853) | |
| 443-612, gnl|Hg17|chr11 (60415324-60415154) | |
| 443-612, gnl|hg17|chr15 (97818372-97818650) | |
| 443-612, gnl|hg17|chr18 (61886746-61886977) | |
| 443-612, gnl|loxAfr1|scaffold_21317 (23904-24166) | |
| 443-612, gnl|loxAfr1|scaffold_21317 (24146-23853) | |
| 443-612, gnl|mm7|chr18 (24643661-24643417) | |
| 443-612, gnl|mm7|chr19 (10585188-10585455) | |
| 443-612, gnl|Mm7|chr19 (10585149-10585318) | |
| 443-612, gnl|monDom2|scaffold_33 (27937353-27937043) | |
| 443-612, gnl|oryCun1|scaffold_167953 (6395-6152) | |
| 443-612, gnl|oryCun1|scaffold_167953 (6172-6448) | |
| 443-612, gnl|panTro1|chr16 (98888560-98888840) | |
| 443-612, gnl|panTro1|chr17 (58746956-58747187) | |
| 443-612, gnl|rheMac2|chr14 (13227423-13227179) | |
| 443-612, gnl|rheMac2|chr7 (79488370-79488651) | |
| 443-612, gnl|rn3|chr1 (213559889-213560157) | |
| 443-612, gnl|rn3|chr2 (186485744-186486007) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 175-349, gnl|bosTau2|chr29 (34911805-34911979) | |
| 175-349, gnl|Hg17|chr11 (60422321-60422147) | |
| 175-349, gnl|Mm7|chr19 (10583414-10583588) | |
| 443-612, gnl|bosTau2|chr29 (34913615-34913783) | |
| 443-612, gnl|canFam2|chr1 (14530286-14530034) | |
| 443-612, gnl|canFam2|chr18 (58429466-58429745) | |
| 443-612, gnl|dasNov1|scaffold_138033 (3693-3438) | |
| 443-612, gnl|dasNov1|scaffold_138033 (3450-3719) | |
| 443-612, gnl|echTel1|scaffold_160213 (7806-7567) | |
| 443-612, gnl|echTel1|scaffold_160213 (7585-7853) | |
| 443-612, gnl|Hg17|chr11 (60415324-60415154) | |
| 443-612, gnl|hg17|chr15 (97818372-97818650) | |
| 443-612, gnl|hg17|chr18 (61886746-61886977) | |
| 443-612, gnl|loxAfr1|scaffold_21317 (23904-24166) | |
| 443-612, gnl|loxAfr1|scaffold_21317 (24146-23853) | |
| 443-612, gnl|mm7|chr18 (24643661-24643417) | |
| 443-612, gnl|mm7|chr19 (10585188-10585455) | |
| 443-612, gnl|Mm7|chr19 (10585149-10585318) | |
| 443-612, gnl|monDom2|scaffold_33 (27937353-27937043) | |
| 443-612, gnl|oryCun1|scaffold_167953 (6395-6152) | |
| 443-612, gnl|oryCun1|scaffold_167953 (6172-6448) | |
| 443-612, gnl|panTro1|chr16 (98888560-98888840) | |
| 443-612, gnl|panTro1|chr17 (58746956-58747187) | |
| 443-612, gnl|rheMac2|chr14 (13227423-13227179) | |
| 443-612, gnl|rheMac2|chr7 (79488370-79488651) | |
| 443-612, gnl|rn3|chr1 (213559889-213560157) | |
| 443-612, gnl|rn3|chr2 (186485744-186486007) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |