Non-Coding RNA Search

Ss1.1-Pig4-TMW8010K10.5

Sequence:


               
               GAGCAGTAAATCTCAGACCTGAAGGTCTTGGTTCACTTCTCTCAGAACTTAGAGGATGTG
CCACCTTGCATTTGGAAAGCATTTTATCCAGAAAAATGGAAACTTTCTAAACCCAGGTAC
AGCAGTCCCCTCACTGTTTTTCCTCCTCCTGGGCTATACCTTGCCTCCTTATGGAAGAGG
TGCATCAGAGGATTGAGCCTAATGTTTCTCTCCATGGCATGGGGAATACTTGACTGTCCA
TACTTCTCTCAGCAGCTGCCTGAAACCACAGGTGGCTCCACCCAGTGCTTCAGCAAACTG
AAGGTCTGCTGCCCTCAGAGGCCCTATTCTGGCTATACCCCGACAAAGCCAATGGCTACT
GACCCTTCATAGGTACTTCCTGACCATTCTTGCCCGCCTCAAGCACATGAGGAGCTGTGA
TCGAAGTTTGTGCAGTTCTATTTCCAGGTGAGATAAATGGCATGGGCAGTTGGGCTAGGA
GTATAACTAACTCCTTTGACTGTGTAGTGCCACATAGGTGATTGGTAGGGGGGAAGGTGT
GGTGCTCCTGTCCCCAGTAAACTCCCTCANAGATACTGTGTCCCAACACATGAGTCTTTG
TCCTTCTCTTCCTCTTCTTCTTGCCTTTCCCCAGTCTGTCTGTGGAAGTTCCTTTCAAAA
CCCTCTCTCTGGTTTTCCCATTTCCTACTTCACTAAAATATACCCCTGCCCTCAAAGAAA
CAGTTTTGATGACTCCCCACTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGTAAATCTCAGACCTGAAGGTCTTGGTTCACTTCTCTCAGAACTTAGAGGATGTG
CCACCTTGCATTTGGAAAGCATTTTATCCAGAAAAATGGAAACTTTCTAAACCCAGGTAC
AGCAGTCCCCTCACTGTTTTTCCTCCTCCTGGGCTATACCTTGCCTCCTTATGGAAGAGG
TGCATCAGAGGATTGAGCCTAATGTTTCTCTCCATGGCATGGGGAATACTTGACTGTCCA
TACTTCTCTCAGCAGCTGCCTGAAACCACAGGTGGCTCCACCCAGTGCTTCAGCAAACTG
AAGGTCTGCTGCCCTCAGAGGCCCTATTCTGGCTATACCCCGACAAAGCCAATGGCTACT
GACCCTTCATAGGTACTTCCTGACCATTCTTGCCCGCCTCAAGCACATGAGGAGCTGTGA
TCGAAGTTTGTGCAGTTCTATTTCCAGGTGAGATAAATGGCATGGGCAGTTGGGCTAGGA
GTATAACTAACTCCTTTGACTGTGTAGTGCCACATAGGTGATTGGTAGGGGGGAAGGTGT
GGTGCTCCTGTCCCCAGTAAACTCCCTCANAGATACTGTGTCCCAACACATGAGTCTTTG
TCCTTCTCTTCCTCTTCTTCTTGCCTTTCCCCAGTCTGTCTGTGGAAGTTCCTTTCAAAA
CCCTCTCTCTGGTTTTCCCATTTCCTACTTCACTAAAATATACCCCTGCCCTCAAAGAAA
CAGTTTTGATGACTCCCCACTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               237-340, + strand, RNAz p=0.964035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-340, + strand, RNAz p=0.964035

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-694, gnl|bosTau2|chrX (28020684-28020024)
               

               
               40-694, gnl|Hg17|chrX (57044160-57043474)
               

               
               40-694, gnl|Mm7|chrX (148593776-148594438)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-694, gnl|bosTau2|chrX (28020684-28020024)
               

               
               40-694, gnl|Hg17|chrX (57044160-57043474)
               

               
               40-694, gnl|Mm7|chrX (148593776-148594438)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	40-694, gnl\|bosTau2\|chrX (28020684-28020024)
	40-694, gnl\|Hg17\|chrX (57044160-57043474)
	40-694, gnl\|Mm7\|chrX (148593776-148594438)