Ss1.1-Pig4-TMW8010K11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGCAAGAAGCAGAAGAAGCGTGGCCGTCCTCCCGCCGAGAAGCTCTCCCCCAACCCAC CCAACCTCACCAAGAAGATGAAGAAGATCGTGGATGCTGTGATCAAATACAAGGACAGTA GTAGTGGACGTCAGCTCAGTGAGGTGTTCATCCAGCTGCCGTCCCGAAAGGAGCTGCCTG AGTACTATGAGCTCATCCGAAAGCCTGTGGACTTCAAGAAGATAAAGGAGCGCATCCGCA ACCACAAGTACCGCAGTCTCAACGACCTGGAGAAGGACGTGATGCTGCTGTGCCAGAATG CGCAGACCTTCAACCTGGAGGGGTCTCTGATCTACGAAGACTCCATTGTCCTGCAGTCGG TCTTCACCAGTGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGGGAGGAGAGCG AGGAGGAGGAGGAGGGCGAGGAGGAAGGCTCGGAGTCGGAGTCTCGCTCGGTCAAAGTGA AGATCAAGCTTGGCCGGAAAGAGAAGGCCCAGGATCGGCTCAAGGGGGGCCGGCGGCGGC CGAGCCGTGGGTCCAGGGCCAAGCCGGTGGTGAGCGATGATGACAGTGAGGAGGAGCAGG AGGAGGACCGCTCAGGAAGTGGCAGTGAGGAAGACTGAGTCCCGACATTCCAGAGTCTCG CCCCCAAGCCCCTCGTACCAGAGCCAAGCCGGCTTAGCCCTTAGCAGTAACGGCTAGCAG CAGATGTAGTTTCAGACTTGAGATAAAACTGTATAAACGAAAATCTTCCATATTTATACG GCAGAGAAGATGTAGGACTGTTTGTGTCTGGCCCTGTCCTGGCATCAGTAGTGTTTGTAA CAGCATTAGCTGTTTAAAACAAGAAAAAAAATTATGAATTGGGGAACACACAACACCTGT TTTTCTTTTCCTTCCCTGGCAGTACTGTTTTCGGCCACAGTTTGGAATCACTGTAGTTTA AGCTGTGGATGCATGTGTGTAGCCGTCCACTCCTCGTACTGTATTTTATTGGACAGGTCA GACTCGCCGGGGCCTGGGGTCCGCAGGCCCGGCAGGGGTATGTCAGTGTCACTGGATGTC AAACAGTAATAAATTAAACCGACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGCAAGAAGCAGAAGAAGCGTGGCCGTCCTCCCGCCGAGAAGCTCTCCCCCAACCCAC CCAACCTCACCAAGAAGATGAAGAAGATCGTGGATGCTGTGATCAAATACAAGGACAGTA GTAGTGGACGTCAGCTCAGTGAGGTGTTCATCCAGCTGCCGTCCCGAAAGGAGCTGCCTG AGTACTATGAGCTCATCCGAAAGCCTGTGGACTTCAAGAAGATAAAGGAGCGCATCCGCA ACCACAAGTACCGCAGTCTCAACGACCTGGAGAAGGACGTGATGCTGCTGTGCCAGAATG CGCAGACCTTCAACCTGGAGGGGTCTCTGATCTACGAAGACTCCATTGTCCTGCAGTCGG TCTTCACCAGTGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGGGAGGAGAGCG AGGAGGAGGAGGAGGGCGAGGAGGAAGGCTCGGAGTCGGAGTCTCGCTCGGTCAAAGTGA AGATCAAGCTTGGCCGGAAAGAGAAGGCCCAGGATCGGCTCAAGGGGGGCCGGCGGCGGC CGAGCCGTGGGTCCAGGGCCAAGCCGGTGGTGAGCGATGATGACAGTGAGGAGGAGCAGG AGGAGGACCGCTCAGGAAGTGGCAGTGAGGAAGACTGAGTCCCGACATTCCAGAGTCTCG CCCCCAAGCCCCTCGTACCAGAGCCAAGCCGGCTTAGCCCTTAGCAGTAACGGCTAGCAG CAGATGTAGTTTCAGACTTGAGATAAAACTGTATAAACGAAAATCTTCCATATTTATACG GCAGAGAAGATGTAGGACTGTTTGTGTCTGGCCCTGTCCTGGCATCAGTAGTGTTTGTAA CAGCATTAGCTGTTTAAAACAAGAAAAAAAATTATGAATTGGGGAACACACAACACCTGT TTTTCTTTTCCTTCCCTGGCAGTACTGTTTTCGGCCACAGTTTGGAATCACTGTAGTTTA AGCTGTGGATGCATGTGTGTAGCCGTCCACTCCTCGTACTGTATTTTATTGGACAGGTCA GACTCGCCGGGGCCTGGGGTCCGCAGGCCCGGCAGGGGTATGTCAGTGTCACTGGATGTC AAACAGTAATAAATTAAACCGACAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 462-562, - strand, RNAz p=0.996759 | |
| 996-1110, + strand, RNAz p=0.662545 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 462-562, - strand, RNAz p=0.996759 | |
| 996-1110, + strand, RNAz p=0.662545 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_003072, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr7 (10155335-10155452) | |
| 1-118, gnl|canFam2|chr20 (53198496-53198229) | |
| 1-118, gnl|danRer3|chr3 (9914796-9914526) | |
| 1-118, gnl|dasNov1|scaffold_6970 (45773-45543) | |
| 1-118, gnl|echTel1|scaffold_287419 (10241-9974) | |
| 1-118, gnl|fr1|chrUn (91995076-91995347) | |
| 1-118, gnl|hg17|chr19 (11012977-11013244) | |
| 1-118, gnl|Hg17|chr19 (11013119-11013236) | |
| 1-118, gnl|loxAfr1|scaffold_12754 (7885-8152) | |
| 1-118, gnl|mm7|chr9 (21565215-21565481) | |
| 1-118, gnl|Mm7|chr9 (21565357-21565474) | |
| 1-118, gnl|monDom2|scaffold_106 (3009828-3010095) | |
| 1-118, gnl|oryCun1|scaffold_189713 (20028-19762) | |
| 1-118, gnl|panTro1|chr20 (11412948-11413215) | |
| 1-118, gnl|rheMac2|chr19 (10863557-10863824) | |
| 1-118, gnl|rn3|chr8 (20796191-20796457) | |
| 1-118, gnl|tetNig1|chr18 (3663432-3663699) | |
| 1-118, gnl|xenTro1|scaffold_1142 (90384-90119) | |
| 213-564, gnl|bosTau2|chr23 (15230911-15230559) | |
| 213-564, gnl|Hg17|chr19 (11030462-11033536) | |
| 213-564, gnl|Mm7|chr9 (21579241-21580396) | |
| 604-1110, gnl|bosTau2|chr7 (10176091-10176603) | |
| 604-1110, gnl|Hg17|chr19 (11033458-11033955) | |
| 604-1110, gnl|Mm7|chr9 (21582239-21582672) | |
| 678-1018, gnl|bosTau2|chr23 (15230564-15230231) | |
| 678-1018, gnl|Hg17|chr19 (11031817-11033867) | |
| 678-1018, gnl|Mm7|chr9 (21580391-21582585) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr7 (10155335-10155452) | |
| 1-118, gnl|canFam2|chr20 (53198496-53198229) | |
| 1-118, gnl|danRer3|chr3 (9914796-9914526) | |
| 1-118, gnl|dasNov1|scaffold_6970 (45773-45543) | |
| 1-118, gnl|echTel1|scaffold_287419 (10241-9974) | |
| 1-118, gnl|fr1|chrUn (91995076-91995347) | |
| 1-118, gnl|hg17|chr19 (11012977-11013244) | |
| 1-118, gnl|Hg17|chr19 (11013119-11013236) | |
| 1-118, gnl|loxAfr1|scaffold_12754 (7885-8152) | |
| 1-118, gnl|mm7|chr9 (21565215-21565481) | |
| 1-118, gnl|Mm7|chr9 (21565357-21565474) | |
| 1-118, gnl|monDom2|scaffold_106 (3009828-3010095) | |
| 1-118, gnl|oryCun1|scaffold_189713 (20028-19762) | |
| 1-118, gnl|panTro1|chr20 (11412948-11413215) | |
| 1-118, gnl|rheMac2|chr19 (10863557-10863824) | |
| 1-118, gnl|rn3|chr8 (20796191-20796457) | |
| 1-118, gnl|tetNig1|chr18 (3663432-3663699) | |
| 1-118, gnl|xenTro1|scaffold_1142 (90384-90119) | |
| 213-564, gnl|bosTau2|chr23 (15230911-15230559) | |
| 213-564, gnl|Hg17|chr19 (11030462-11033536) | |
| 213-564, gnl|Mm7|chr9 (21579241-21580396) | |
| 604-1110, gnl|bosTau2|chr7 (10176091-10176603) | |
| 604-1110, gnl|Hg17|chr19 (11033458-11033955) | |
| 604-1110, gnl|Mm7|chr9 (21582239-21582672) | |
| 678-1018, gnl|bosTau2|chr23 (15230564-15230231) | |
| 678-1018, gnl|Hg17|chr19 (11031817-11033867) | |
| 678-1018, gnl|Mm7|chr9 (21580391-21582585) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| ton (0.1755) | |
| lnt (0.142308) | |
| thg (0.126791) | |
| ese (0.126502) | |
| clu (0.119646) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| ton (0.1755) | |
| lnt (0.142308) | |
| thg (0.126791) | |
| ese (0.126502) | |
| clu (0.119646) |