Non-Coding RNA Search

Ss1.1-Pig4-TMW8010L08.5

Sequence:


               
               CCTTTTTGTACAAAGGAAATGCAGTGGTTACTCTAATTGAGAGTGACTTTTTTTTTGTAT
CACAAGATGGATGAGAAACAGTCAGCTGTCACAAATTATCAGGATACCCCAAATAATAGG
TCTAGCAATTCCAGATTCCACTTGAGAGATGGATTATCCAGCTCTCGATAGCCACCACTG
TAATGCAGAATTGAAGAAAATGCAAAGAAATCAAATCCACCGAGTGAATAAAGGATCATC
TTCCTATTAAGTATCTTGGGACCCTTCGGTAGCCAGTGGGTTGAGTGCGTCAGTACGTGA
CTGGATACTGTGTATTCTCTAGGGTCACCCTCAGAGATGCCACCATATTAGATGATACCT
GTTTCACAGTCCAGGAAACTGCACCAATTTTTGTAAGAAGTAACCAATAAAGTCCCGGTC
ACGAAGCAGGTGTGGGCAAGTCAGAAGTAGGTTTAAGAGAGAGATGTCCAGAAGAAGAAC
GGTTATTTCGGAAGGAGGAAGGCAGCGTATGGTCACCATTTGAGCGGAGGGCAGACTCAA
CAAGTGCCCCAAGTGGAAAGAGTCGGGGAGCCAGTTGGCAGAAAAGCGTTTGCACAGACT
TTATACAAAATAAGAGAGCATTTTATAGTGGAAATGAAAGAAAGGAAGTTGGGTCTTTAC
TCATGTGCGTTTATTCTGAAGGAGATATGGACTATTTGAAAATTAAAAACATACTAATTG
GACCTTAATAAATCATTCTCAATCAGTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTTGTACAAAGGAAATGCAGTGGTTACTCTAATTGAGAGTGACTTTTTTTTTGTAT
CACAAGATGGATGAGAAACAGTCAGCTGTCACAAATTATCAGGATACCCCAAATAATAGG
TCTAGCAATTCCAGATTCCACTTGAGAGATGGATTATCCAGCTCTCGATAGCCACCACTG
TAATGCAGAATTGAAGAAAATGCAAAGAAATCAAATCCACCGAGTGAATAAAGGATCATC
TTCCTATTAAGTATCTTGGGACCCTTCGGTAGCCAGTGGGTTGAGTGCGTCAGTACGTGA
CTGGATACTGTGTATTCTCTAGGGTCACCCTCAGAGATGCCACCATATTAGATGATACCT
GTTTCACAGTCCAGGAAACTGCACCAATTTTTGTAAGAAGTAACCAATAAAGTCCCGGTC
ACGAAGCAGGTGTGGGCAAGTCAGAAGTAGGTTTAAGAGAGAGATGTCCAGAAGAAGAAC
GGTTATTTCGGAAGGAGGAAGGCAGCGTATGGTCACCATTTGAGCGGAGGGCAGACTCAA
CAAGTGCCCCAAGTGGAAAGAGTCGGGGAGCCAGTTGGCAGAAAAGCGTTTGCACAGACT
TTATACAAAATAAGAGAGCATTTTATAGTGGAAATGAAAGAAAGGAAGTTGGGTCTTTAC
TCATGTGCGTTTATTCTGAAGGAGATATGGACTATTTGAAAATTAAAAACATACTAATTG
GACCTTAATAAATCATTCTCAATCAGTAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-747, gnl|bosTau2|chr8 (54388641-54387918)
               

               
               5-747, gnl|Hg17|chr9 (110715843-110715096)
               

               
               5-747, gnl|Mm7|chr4 (58477323-58476650)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-747, gnl|bosTau2|chr8 (54388641-54387918)
               

               
               5-747, gnl|Hg17|chr9 (110715843-110715096)
               

               
               5-747, gnl|Mm7|chr4 (58477323-58476650)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ret (0.257467)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               sto (0.179824)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	5-747, gnl\|bosTau2\|chr8 (54388641-54387918)
	5-747, gnl\|Hg17\|chr9 (110715843-110715096)
	5-747, gnl\|Mm7\|chr4 (58477323-58476650)

	ret (0.257467)
	sto (0.179824)
	cje (0.165235)
	bfe (0.149858)
	pty (0.142714)
	csk (0.140746)
	bla (0.124347)
	tra (0.123092)