Non-Coding RNA Search

Ss1.1-Pig4-TMW8011A19.5

Sequence:


               
               GCCTGGCAGTGCCGTGCTGGTGTTTGACATCGAGCTGCTGGAGCTCGTGGCTGGCCTGCC
CGAGGGGTACATGTTCGTGTGGAACGGCGAGGTGTCCGCCAACCTCTTTGAAGAAATCGA
CAAGGATGGCGATGGAGAGGTCCTCCTGGAAGAGTTCTCAGAGTACATTCATGCCCAGGT
GGCATCTGGCAAAGGGAAACTCGCTCCTGGATTCGATGCTGAGATGATTGTGAAGAATAT
GTTCACCAACCAGGACCGGAATGGAGACGGGAAGGTCACGGCTGAGGAATTTAAACTCAA
AGACCAGGAGGCCAAACACGATGAACTCTAAACCTTGGCCCCTTGTGTGACACCAAGGCC
CCCTGTGGTGGCAGAATGTACAGTGAGGATTTGAGGGTCTCTCAGAAGGGGAGTCGTCAG
CAAGTAGTAGCTGGGTCACGTGGTACCTGGGACATACACCGGGGTGGCTTGATACACATG
GTGAGAATTTTAGGCCAGTGCCAGTGATACTAAACAAAAGCATCGTGGGAGCCTTAGCGT
GGGTTGCATAGAACATCAAAGAGGCTGCATTGTCAGCTATTGTTTTGTGAGCCTTTGGGT
AGTCTTGTTATTAAAAGAAAATAGTGTCATACAGAAGTTATAATCCACTTGGAGGAAAGA
AGAAAAAGTGCCTAGGGTATCTACAAAACGAGGACTAAAATTTTTTGTGTGTTTTTAAAA
AAGTGTTCTCCAGATGGTCAGAAAAGAGAGGACATGCCCCAGCAGGATTCCCAGACAGTT
CCAGGAAGTGTTTCCCAGCACCCTTTCTAGGCTCTGGTAATGCCCAGCCTCCAAGGTGCC
TCTACACTTGGACACACACACACTTTTCTAGTAAATCACACTCCACCTCATTGTGGTCCT
CCTTGGCCAGGTAGCTTGGAGGATAAAAAGGAGATGGATGGAACAAAAGGCATCTTGGAA
CAAAAGGCATCTTGGACCACAAGTAGAGAATTTGATTCTGCATTTGTCTTGTAGGAGTAC
CTGCTTCACTCTTTGCTATCCCCACCACTGTATCCCATGGCACCCTCTCATCCTGAATCC
TTTGATCAGATAACATGTAGGGCTGATGGCCAAGCCGAGCTCCAGAGCATCTCACTGTGG
CCAAGATGGAAATGTCATCCTGGCAGTGAGCATACACTAAGTGACATATTCCTGCCACTC
GTCTTGGAGAGGAAGGTGTCCCAAGGCCTGGGGGCCTCTCGGTGTAGAAGGACATTACAC
CTCCTAGCCTGTCCCACGTTATGCAGAAACCACCCGGCTGCCTTATGTCTTCTGTTCCCC
AGTGGTGGTGGCACTCACCCTGAAGTAATCCATCGTTTTCCTTTTGAAATGGCTGTTTGA
CTAATTTAAACTATTTTGTACTGATGTAGCTGAGATAGTTCATGAAAATGCTGTGCACTC
ATTCAATGGAATAAATGTTGGAAAATGAATCTTATATAAGATACTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCAGTGCCGTGCTGGTGTTTGACATCGAGCTGCTGGAGCTCGTGGCTGGCCTGCC
CGAGGGGTACATGTTCGTGTGGAACGGCGAGGTGTCCGCCAACCTCTTTGAAGAAATCGA
CAAGGATGGCGATGGAGAGGTCCTCCTGGAAGAGTTCTCAGAGTACATTCATGCCCAGGT
GGCATCTGGCAAAGGGAAACTCGCTCCTGGATTCGATGCTGAGATGATTGTGAAGAATAT
GTTCACCAACCAGGACCGGAATGGAGACGGGAAGGTCACGGCTGAGGAATTTAAACTCAA
AGACCAGGAGGCCAAACACGATGAACTCTAAACCTTGGCCCCTTGTGTGACACCAAGGCC
CCCTGTGGTGGCAGAATGTACAGTGAGGATTTGAGGGTCTCTCAGAAGGGGAGTCGTCAG
CAAGTAGTAGCTGGGTCACGTGGTACCTGGGACATACACCGGGGTGGCTTGATACACATG
GTGAGAATTTTAGGCCAGTGCCAGTGATACTAAACAAAAGCATCGTGGGAGCCTTAGCGT
GGGTTGCATAGAACATCAAAGAGGCTGCATTGTCAGCTATTGTTTTGTGAGCCTTTGGGT
AGTCTTGTTATTAAAAGAAAATAGTGTCATACAGAAGTTATAATCCACTTGGAGGAAAGA
AGAAAAAGTGCCTAGGGTATCTACAAAACGAGGACTAAAATTTTTTGTGTGTTTTTAAAA
AAGTGTTCTCCAGATGGTCAGAAAAGAGAGGACATGCCCCAGCAGGATTCCCAGACAGTT
CCAGGAAGTGTTTCCCAGCACCCTTTCTAGGCTCTGGTAATGCCCAGCCTCCAAGGTGCC
TCTACACTTGGACACACACACACTTTTCTAGTAAATCACACTCCACCTCATTGTGGTCCT
CCTTGGCCAGGTAGCTTGGAGGATAAAAAGGAGATGGATGGAACAAAAGGCATCTTGGAA
CAAAAGGCATCTTGGACCACAAGTAGAGAATTTGATTCTGCATTTGTCTTGTAGGAGTAC
CTGCTTCACTCTTTGCTATCCCCACCACTGTATCCCATGGCACCCTCTCATCCTGAATCC
TTTGATCAGATAACATGTAGGGCTGATGGCCAAGCCGAGCTCCAGAGCATCTCACTGTGG
CCAAGATGGAAATGTCATCCTGGCAGTGAGCATACACTAAGTGACATATTCCTGCCACTC
GTCTTGGAGAGGAAGGTGTCCCAAGGCCTGGGGGCCTCTCGGTGTAGAAGGACATTACAC
CTCCTAGCCTGTCCCACGTTATGCAGAAACCACCCGGCTGCCTTATGTCTTCTGTTCCCC
AGTGGTGGTGGCACTCACCCTGAAGTAATCCATCGTTTTCCTTTTGAAATGGCTGTTTGA
CTAATTTAAACTATTTTGTACTGATGTAGCTGAGATAGTTCATGAAAATGCTGTGCACTC
ATTCAATGGAATAAATGTTGGAAAATGAATCTTATATAAGATACTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51105878|gb|EAL24462.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51105878|gb|EAL24462.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               192-311, + strand, RNAz p=0.986085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-311, + strand, RNAz p=0.986085

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               153-887, gnl|bosTau2|chr4 (34532106-34532844)
               

               
               153-887, gnl|Hg17|chr7 (32818025-32818783)
               

               
               153-887, gnl|Mm7|chr6 (56841402-56842091)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-887, gnl|bosTau2|chr4 (34532106-34532844)
               

               
               153-887, gnl|Hg17|chr7 (32818025-32818783)
               

               
               153-887, gnl|Mm7|chr6 (56841402-56842091)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               jca (0.45584)
               

               
               ova (0.387397)
               

               
               fat (0.294855)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.45584)
               

               
               ova (0.387397)
               

               
               fat (0.294855)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	153-887, gnl\|bosTau2\|chr4 (34532106-34532844)
	153-887, gnl\|Hg17\|chr7 (32818025-32818783)
	153-887, gnl\|Mm7\|chr6 (56841402-56842091)

	jca (0.45584)
	ova (0.387397)
	fat (0.294855)
	cly (0.241284)
	eru (0.240096)
	eje (0.197668)
	aor (0.195274)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	pty (0.142714)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	cov (0.132153)
	sug (0.127291)
	ese (0.126502)
	pgl (0.118483)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)