Non-Coding RNA Search

Ss1.1-Pig4-TMW8011B23.3

Sequence:


               
               GCATCCTCCCCACTGTTCACATCTGCATTAGACACTCGTGCCTTTCTCTGGAGAGGGTTT
GGATGCAGACCTCAGCCCTGGAGCTTCGGAGTGCTTGCCCTTCTTCAAGGATCCAGTGTT
TACTGGGGTTCACCTTCGTTTTCTCAAAAGGCCATCCCATCATGTCCCTGAGGAATGCAT
TTGTAGAAGAAGCCTTGGGGTGTGGAGCTGTGATTTTCTAAACCTCTCTCCCAAGATCTT
AAAAAGACAAGGCTGCCGAAGTGGGTCACTCAGGAGAAGACATCACTGTACCTGTGCTCG
GCATTGCAGACTTGCCTGGGGCTCACAGTCTCCCCTCACTGCTCTCTCCATCACTGGTCA
CCTGCTGCCCCCAAGCCCACGGCCAGCGGGTCAGACCCTCAGAGACACAAGAGGGCCTTG
CGGAGAGGGCTGCTTCTCCATTTTTCCCCAATACAACGTGGCTGGAAGAGAAGATAACTG
CTTTGACACTCCCTTTCTCTAAAGGAAATATAGTTTGATAGTATATTTTGAATATAGATG
TTCTTATAGTCAGACTGGGACCCAAACTTGAGTGTTGATTCATATGTTCGTGCTATCGCT
GTGGTCTTCTTATCATAACTTTTTCCTTTCTTCCTACATGTTCCTTTAAAAAAAAAAAAA
AAAAGATGGCCTTTGAAAGTGTGTGTCCTCAGTGTCCTATGAACCTACTTAAACTGAGTT
TGGTGATTGTCTCTCTTCAAAGACTTCAACCTACAAAGAAGCAGGTTACACATTGCTCTG
AGATTCATTTCCCAGCATCCTGCTGTCTGGTCTCTCAACCTTATCATAATATTTCTGTCT
GTGATGGCTTTTAATATATCAATGTGTGTGTATATATAGAGAAAGAAATCTGTAAAGTAA
AATTTATATATAATATATGTAATCAGAGATACATATGTTATATATATATATATATATATA
TATGTGGGATGTATGACTTATTTTTCCTTATCCACAGAATTCAGCTACCATGTATATATA
AATAAACTTATTTTATTAGCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCCTCCCCACTGTTCACATCTGCATTAGACACTCGTGCCTTTCTCTGGAGAGGGTTT
GGATGCAGACCTCAGCCCTGGAGCTTCGGAGTGCTTGCCCTTCTTCAAGGATCCAGTGTT
TACTGGGGTTCACCTTCGTTTTCTCAAAAGGCCATCCCATCATGTCCCTGAGGAATGCAT
TTGTAGAAGAAGCCTTGGGGTGTGGAGCTGTGATTTTCTAAACCTCTCTCCCAAGATCTT
AAAAAGACAAGGCTGCCGAAGTGGGTCACTCAGGAGAAGACATCACTGTACCTGTGCTCG
GCATTGCAGACTTGCCTGGGGCTCACAGTCTCCCCTCACTGCTCTCTCCATCACTGGTCA
CCTGCTGCCCCCAAGCCCACGGCCAGCGGGTCAGACCCTCAGAGACACAAGAGGGCCTTG
CGGAGAGGGCTGCTTCTCCATTTTTCCCCAATACAACGTGGCTGGAAGAGAAGATAACTG
CTTTGACACTCCCTTTCTCTAAAGGAAATATAGTTTGATAGTATATTTTGAATATAGATG
TTCTTATAGTCAGACTGGGACCCAAACTTGAGTGTTGATTCATATGTTCGTGCTATCGCT
GTGGTCTTCTTATCATAACTTTTTCCTTTCTTCCTACATGTTCCTTTAAAAAAAAAAAAA
AAAAGATGGCCTTTGAAAGTGTGTGTCCTCAGTGTCCTATGAACCTACTTAAACTGAGTT
TGGTGATTGTCTCTCTTCAAAGACTTCAACCTACAAAGAAGCAGGTTACACATTGCTCTG
AGATTCATTTCCCAGCATCCTGCTGTCTGGTCTCTCAACCTTATCATAATATTTCTGTCT
GTGATGGCTTTTAATATATCAATGTGTGTGTATATATAGAGAAAGAAATCTGTAAAGTAA
AATTTATATATAATATATGTAATCAGAGATACATATGTTATATATATATATATATATATA
TATGTGGGATGTATGACTTATTTTTCCTTATCCACAGAATTCAGCTACCATGTATATATA
AATAAACTTATTTTATTAGCCGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               924-1043, - strand, RNAz p=0.561846

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               924-1043, - strand, RNAz p=0.561846

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1044, gnl|bosTau2|chr1 (58004889-58005925)
               

               
               2-1044, gnl|Hg17|chr3 (134598253-134599314)
               

               
               2-1044, gnl|Mm7|chr9 (103198745-103197697)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1044, gnl|bosTau2|chr1 (58004889-58005925)
               

               
               2-1044, gnl|Hg17|chr3 (134598253-134599314)
               

               
               2-1044, gnl|Mm7|chr9 (103198745-103197697)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               ova (0.129132)

	2-1044, gnl\|bosTau2\|chr1 (58004889-58005925)
	2-1044, gnl\|Hg17\|chr3 (134598253-134599314)
	2-1044, gnl\|Mm7\|chr9 (103198745-103197697)