Ss1.1-Pig4-TMW8011C11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAAGCCAATTTCAAAAAGCTTTCTGTGCGGGGTCTCAGATACCCCGACAGCTTTTCG ACTTGGAATTGATTGTAAGGAAGTCAGCGTGTGAAAGAGTATCAGCATTTTAAAGCTCTT GAAACACAGAGGTCTGAGTAGCCTTCTGGAAAAATCGTGCCATGGCTGCCAAAAGTGAGC ATCAAATAGTGTCATCTGAAATGTTGCCAGCATTTAGTGAGACTGCTAATGTTGAAAGAA AGCAAGATTTAAGTGAGGACCAAACGGAGCACCAGAAGGCAGGATTAGGTGAAGGGATCG AACCAATATCCAAACGGCAAATGAAGAAACTAATGAAACAGAAACAATGGGAAGAACAAA GAGAACTCCGCAAACAAAAGCGGAAGGAAAAACGCAAGAGGAAGCAATTAGAGCGACAGT GTCAGCTGGAATCAAACTCAGATGGAAGTGACAGAAAACGTATTCGAAGAGATGTTGTTC ACAGCACACTCCGCCTTATCATTGACTGCAGTTTTGACAGCTTGATGGTGTTAAAGGACA TTAAAAAACTTCATAAGCAGATTCAACGGTGTTATGCAGAAAATCGACGAGCACTGCATC CTGTGCAGTTTTACTTGACAAGCCATGGAGGCCAGTTGAAAAAGAACATGGATGAAAATG ACAAAGGATGGGTCAACTGGAAGGATATCCATATCAAACCAGAGCACTATAGTGAATTCA TTAAGAAAGAAGACCTGATTTATCTGACATCAGATTCACCTAATGTACTAAAGGAATTAG ATGAATCAAAGGCCTATGTGATTGGAGGATTAGTAGATCACAACCATCACAAGGGACTTA CATATAAACAAGCATCAGATTATGGAATTGATCATGCACAGCTTCCCCTTGGAAATTTTG TGAAGATGAACAGTAGAAAAGTTTTGGCAGTTAATCATGTGTTTGAGATTATTCTGGAAT ACCTGGAAACAAGAGACTGGCAAGAAGCATTTTTCACTATCTTACCCCAAAGGAAGGGAG CTGTTCCCACAGACAAAGCCTGTGAAAGTTCCTCACATGACAAGGAATTCGCCACAGCTG AAGGTGGATTGAACAGTGATTCCAGTGAGGAGGAAAATAGCAGAAATGAGCAAAATTCAC CACATGAAGAAAAGCAGGATAAAGAAAACAGCTCTGAGTCTACGGTGAACTCTGTACCAC AGGTGAGCTGCAGCCACTCCCCGCCTCTTCAGGACACTGTCCAAGACCAACAGCAGGATG AAGTTAACAATGAAACCAAGCCACAAGATGGAAGGACCCTGGGCCTCTGAATCAGCAAGG AAAGTGAAGTCTTCTGCTGACTGAAAACACACACTTTGGATTCTTAAGTGAGAAATAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAAGCCAATTTCAAAAAGCTTTCTGTGCGGGGTCTCAGATACCCCGACAGCTTTTCG ACTTGGAATTGATTGTAAGGAAGTCAGCGTGTGAAAGAGTATCAGCATTTTAAAGCTCTT GAAACACAGAGGTCTGAGTAGCCTTCTGGAAAAATCGTGCCATGGCTGCCAAAAGTGAGC ATCAAATAGTGTCATCTGAAATGTTGCCAGCATTTAGTGAGACTGCTAATGTTGAAAGAA AGCAAGATTTAAGTGAGGACCAAACGGAGCACCAGAAGGCAGGATTAGGTGAAGGGATCG AACCAATATCCAAACGGCAAATGAAGAAACTAATGAAACAGAAACAATGGGAAGAACAAA GAGAACTCCGCAAACAAAAGCGGAAGGAAAAACGCAAGAGGAAGCAATTAGAGCGACAGT GTCAGCTGGAATCAAACTCAGATGGAAGTGACAGAAAACGTATTCGAAGAGATGTTGTTC ACAGCACACTCCGCCTTATCATTGACTGCAGTTTTGACAGCTTGATGGTGTTAAAGGACA TTAAAAAACTTCATAAGCAGATTCAACGGTGTTATGCAGAAAATCGACGAGCACTGCATC CTGTGCAGTTTTACTTGACAAGCCATGGAGGCCAGTTGAAAAAGAACATGGATGAAAATG ACAAAGGATGGGTCAACTGGAAGGATATCCATATCAAACCAGAGCACTATAGTGAATTCA TTAAGAAAGAAGACCTGATTTATCTGACATCAGATTCACCTAATGTACTAAAGGAATTAG ATGAATCAAAGGCCTATGTGATTGGAGGATTAGTAGATCACAACCATCACAAGGGACTTA CATATAAACAAGCATCAGATTATGGAATTGATCATGCACAGCTTCCCCTTGGAAATTTTG TGAAGATGAACAGTAGAAAAGTTTTGGCAGTTAATCATGTGTTTGAGATTATTCTGGAAT ACCTGGAAACAAGAGACTGGCAAGAAGCATTTTTCACTATCTTACCCCAAAGGAAGGGAG CTGTTCCCACAGACAAAGCCTGTGAAAGTTCCTCACATGACAAGGAATTCGCCACAGCTG AAGGTGGATTGAACAGTGATTCCAGTGAGGAGGAAAATAGCAGAAATGAGCAAAATTCAC CACATGAAGAAAAGCAGGATAAAGAAAACAGCTCTGAGTCTACGGTGAACTCTGTACCAC AGGTGAGCTGCAGCCACTCCCCGCCTCTTCAGGACACTGTCCAAGACCAACAGCAGGATG AAGTTAACAATGAAACCAAGCCACAAGATGGAAGGACCCTGGGCCTCTGAATCAGCAAGG AAAGTGAAGTCTTCTGCTGACTGAAAACACACACTTTGGATTCTTAAGTGAGAAATAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 681-848, - strand, RNAz p=0.991924 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 681-848, - strand, RNAz p=0.991924 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 179-373, gnl|bosTau2|chr6 (9731084-9731278) | |
| 179-373, gnl|Hg17|chr4 (100837683-100837489) | |
| 179-373, gnl|Mm7|chr3 (137955616-137955809) | |
| 374-537, gnl|bosTau2|chr6 (9735453-9735616) | |
| 374-537, gnl|canFam2|chr32 (24486579-24486746) | |
| 374-537, gnl|danRer3|chr23 (8725015-8725182) | |
| 374-537, gnl|dasNov1|scaffold_6604 (3129-3302) | |
| 374-537, gnl|echTel1|scaffold_210487 (500-333) | |
| 374-537, gnl|hg17|chr4 (100836382-100836549) | |
| 374-537, gnl|Hg17|chr4 (100836546-100836383) | |
| 374-537, gnl|mm7|chr3 (137956756-137956592) | |
| 374-537, gnl|Mm7|chr3 (137956593-137956753) | |
| 374-537, gnl|monDom2|scaffold_37 (13232345-13232178) | |
| 374-537, gnl|oryCun1|scaffold_179793 (7358-7191) | |
| 374-537, gnl|panTro1|chr3 (117212825-117212993) | |
| 374-537, gnl|rheMac2|chr5 (92528501-92528668) | |
| 374-537, gnl|rn3|chr2 (235661596-235661429) | |
| 374-537, gnl|xenTro1|scaffold_382 (779008-778841) | |
| 681-848, gnl|bosTau2|chr6 (9743491-9743657) | |
| 681-848, gnl|Hg17|chr4 (100832272-100832110) | |
| 681-848, gnl|Mm7|chr3 (137960428-137960584) | |
| 939-1201, gnl|bosTau2|chr6 (9747648-9747910) | |
| 939-1201, gnl|Hg17|chr4 (100827692-100827427) | |
| 939-1201, gnl|Mm7|chr3 (137964943-137965195) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-373, gnl|bosTau2|chr6 (9731084-9731278) | |
| 179-373, gnl|Hg17|chr4 (100837683-100837489) | |
| 179-373, gnl|Mm7|chr3 (137955616-137955809) | |
| 374-537, gnl|bosTau2|chr6 (9735453-9735616) | |
| 374-537, gnl|canFam2|chr32 (24486579-24486746) | |
| 374-537, gnl|danRer3|chr23 (8725015-8725182) | |
| 374-537, gnl|dasNov1|scaffold_6604 (3129-3302) | |
| 374-537, gnl|echTel1|scaffold_210487 (500-333) | |
| 374-537, gnl|hg17|chr4 (100836382-100836549) | |
| 374-537, gnl|Hg17|chr4 (100836546-100836383) | |
| 374-537, gnl|mm7|chr3 (137956756-137956592) | |
| 374-537, gnl|Mm7|chr3 (137956593-137956753) | |
| 374-537, gnl|monDom2|scaffold_37 (13232345-13232178) | |
| 374-537, gnl|oryCun1|scaffold_179793 (7358-7191) | |
| 374-537, gnl|panTro1|chr3 (117212825-117212993) | |
| 374-537, gnl|rheMac2|chr5 (92528501-92528668) | |
| 374-537, gnl|rn3|chr2 (235661596-235661429) | |
| 374-537, gnl|xenTro1|scaffold_382 (779008-778841) | |
| 681-848, gnl|bosTau2|chr6 (9743491-9743657) | |
| 681-848, gnl|Hg17|chr4 (100832272-100832110) | |
| 681-848, gnl|Mm7|chr3 (137960428-137960584) | |
| 939-1201, gnl|bosTau2|chr6 (9747648-9747910) | |
| 939-1201, gnl|Hg17|chr4 (100827692-100827427) | |
| 939-1201, gnl|Mm7|chr3 (137964943-137965195) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| kid (0.259471) | |
| mgp (0.230681) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| mgp (0.230681) | |
| tbr (0.154178) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| med (0.116252) | |
| jej (0.0989218) |