Non-Coding RNA Search

Ss1.1-Pig4-TMW8011C12.3.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTACTTTTATAATTTTATTGACTCTCTTCTCCTCTCTT
GAAAACAACAAACAGCACATGAAAACAGCATCTTATCCAAAAGTTTCAACTCAATTCACT
GCCTCCGTGAGGCCCTGAGAAGCATTCTACCACTTTACACCTCTGACAAACAATGGCAAA
GACAGGGGTTTAAGTAGCAAGTTCAAGGTTCTGCCCACCCCAGGACACACAGCTGGAAAT
CAAATCCTCGTTGCCAACTGCAGGGACTCCAGCTCTATGCCTATCTTGTTTTCGGTACAT
CTTCCTGTCTGTTTAAGGCTGGGTCTTCCTGGGGGCTATCCTTCAGGGTGGGTCAAGGCT
GAGCGCGGTCTGGGTCGATGGCCACCTCCCAGCCGCCCCCGGCTGACCAGGGAGGAAATC
ATTTCCAGTTTTCTGTCCCCATCATTTACCCCCCTCTCCCTCCTTCAAAACTGGCTGCCC
TCACTTTTGTGTAGCAAAGGAGTCAGTGTCCATTACATTGCCTGAGAGGCGGTTTGAGCC
TGACATACCTTCCTGAGCTAAAAAAGGAAAACATACCTCTGTGGCTGTCCTGCCACGAGA
TCAGGTAACGACGGGAAAAGCGCTACTGAGAAAGGGCGGTGCTGGGGAAGCGTCGCAGGC
CCTCCCCTCCCCACCCCACGGAGGATCCTCCCACACGAGCTCTTGCGGGTACAAGGCGGC
AGGGATCTTGGGGCCAAGGAGGTACGATGAAGGGAAACCCGTCTATTTTGCCCTTTTGAG
CTTCCCTGCTGCCCCGGTCTTTGCCTTCTTCTTAGCGGATCCCTTGGGCTCTGGCTCCTT
GCGCTTAGCGGACGAGAGGGAGCCGGTCACCTTGAAGAAATCATCCAGGCGGCCCTGGGT
GCTGCCCTGGCGGCTCTTGCTCAGCCGCCTGACCCCGCTGCGGATTCGCTCCTCGGAGAA
CTGCTTCTCGCCGCACATGAACTTGACGAGCTCTTCTTCATTTGGCTCGCTCCACTTCAG
CTCCACAGCCTCCGGGTCCAGCACCTCCGGCTCCAGGAAGAGCTGCTGGGCCTCCTTGTG
GAGCCAGTTTTCCGGCACAGGGTACTTGTTGGGGTCGAGCCGACGCACGATCTCCTCGAT
GCTCTTGTGCTTCTGGATGAGGTCCACGGCCCGCTTGGGCCCAATGCCCCGAATGCTCTC
ACAGTAGTCGCTGCCCAGCAGGATGCAGAGATCCACAAACTGCTCCTGGTTCAGGCCCAG
CTCCTGCAGGACCCGGCTCAGGTGGAACTCCTGGATGGGCAGCTTCTTGGCCTCACTGGC
AGTCAGGTGCCGCATGAGCACGGGGCTGCCGAAGGTCAGGCAATCCATGTCCTCTGTGGC
CGCGGCGTAGACTTTGCCAGCCTTCACCAGGGCTGCGCAGCTGGCCTCCGCCTCGCTGGG
CGCGTCGAGGTACGGGACGCCCATGAGGCTCAGGAGATGCTTGCACTCATCGTTGTGCTG
CTTGGTGACCTTGACCAGGCGCTTGGTAAACTTCTCCACCTCCTCCCCGGCGCCGGCAGC
CTGCGCCTGCTGCAGCTGCTTCTCCGCCTCGGCCCGCCGCTCGCTGCGTTTGGCCAGCTC
CCCCGACTTGAGCTGCGGCGGCTTGCCGTCGAAGACGTACACGGGCTTGATGCCGTTCTC
CATCATGCGGATGGTGCGGTAGAACATGCCCATCAGGTGGCTGGTGGTCTCGCCCTCCTC
GTTCTGCAGCACATCCCCGCCCTGGCGAACGGCGATCAGGAACTGATAGATGCTCATGGA
GGCATCGATGGCCACCTTGCGGCCAAAGTAGCTCTTGATGTCATTCTCCCGGATGGCCCC
AGGGGCCACGTCGGCGATCAGTTTGGCCAGTCCTTGAATCCCCATAGCAGTGCGGAGGAG
GGCCGGCTGGCCTCTGGGACGTGAAGCCTCGGCAGCTGGCGATTGCTCCTGTGTGGCCCA
GGGCCGACCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTACTTTTATAATTTTATTGACTCTCTTCTCCTCTCTT
GAAAACAACAAACAGCACATGAAAACAGCATCTTATCCAAAAGTTTCAACTCAATTCACT
GCCTCCGTGAGGCCCTGAGAAGCATTCTACCACTTTACACCTCTGACAAACAATGGCAAA
GACAGGGGTTTAAGTAGCAAGTTCAAGGTTCTGCCCACCCCAGGACACACAGCTGGAAAT
CAAATCCTCGTTGCCAACTGCAGGGACTCCAGCTCTATGCCTATCTTGTTTTCGGTACAT
CTTCCTGTCTGTTTAAGGCTGGGTCTTCCTGGGGGCTATCCTTCAGGGTGGGTCAAGGCT
GAGCGCGGTCTGGGTCGATGGCCACCTCCCAGCCGCCCCCGGCTGACCAGGGAGGAAATC
ATTTCCAGTTTTCTGTCCCCATCATTTACCCCCCTCTCCCTCCTTCAAAACTGGCTGCCC
TCACTTTTGTGTAGCAAAGGAGTCAGTGTCCATTACATTGCCTGAGAGGCGGTTTGAGCC
TGACATACCTTCCTGAGCTAAAAAAGGAAAACATACCTCTGTGGCTGTCCTGCCACGAGA
TCAGGTAACGACGGGAAAAGCGCTACTGAGAAAGGGCGGTGCTGGGGAAGCGTCGCAGGC
CCTCCCCTCCCCACCCCACGGAGGATCCTCCCACACGAGCTCTTGCGGGTACAAGGCGGC
AGGGATCTTGGGGCCAAGGAGGTACGATGAAGGGAAACCCGTCTATTTTGCCCTTTTGAG
CTTCCCTGCTGCCCCGGTCTTTGCCTTCTTCTTAGCGGATCCCTTGGGCTCTGGCTCCTT
GCGCTTAGCGGACGAGAGGGAGCCGGTCACCTTGAAGAAATCATCCAGGCGGCCCTGGGT
GCTGCCCTGGCGGCTCTTGCTCAGCCGCCTGACCCCGCTGCGGATTCGCTCCTCGGAGAA
CTGCTTCTCGCCGCACATGAACTTGACGAGCTCTTCTTCATTTGGCTCGCTCCACTTCAG
CTCCACAGCCTCCGGGTCCAGCACCTCCGGCTCCAGGAAGAGCTGCTGGGCCTCCTTGTG
GAGCCAGTTTTCCGGCACAGGGTACTTGTTGGGGTCGAGCCGACGCACGATCTCCTCGAT
GCTCTTGTGCTTCTGGATGAGGTCCACGGCCCGCTTGGGCCCAATGCCCCGAATGCTCTC
ACAGTAGTCGCTGCCCAGCAGGATGCAGAGATCCACAAACTGCTCCTGGTTCAGGCCCAG
CTCCTGCAGGACCCGGCTCAGGTGGAACTCCTGGATGGGCAGCTTCTTGGCCTCACTGGC
AGTCAGGTGCCGCATGAGCACGGGGCTGCCGAAGGTCAGGCAATCCATGTCCTCTGTGGC
CGCGGCGTAGACTTTGCCAGCCTTCACCAGGGCTGCGCAGCTGGCCTCCGCCTCGCTGGG
CGCGTCGAGGTACGGGACGCCCATGAGGCTCAGGAGATGCTTGCACTCATCGTTGTGCTG
CTTGGTGACCTTGACCAGGCGCTTGGTAAACTTCTCCACCTCCTCCCCGGCGCCGGCAGC
CTGCGCCTGCTGCAGCTGCTTCTCCGCCTCGGCCCGCCGCTCGCTGCGTTTGGCCAGCTC
CCCCGACTTGAGCTGCGGCGGCTTGCCGTCGAAGACGTACACGGGCTTGATGCCGTTCTC
CATCATGCGGATGGTGCGGTAGAACATGCCCATCAGGTGGCTGGTGGTCTCGCCCTCCTC
GTTCTGCAGCACATCCCCGCCCTGGCGAACGGCGATCAGGAACTGATAGATGCTCATGGA
GGCATCGATGGCCACCTTGCGGCCAAAGTAGCTCTTGATGTCATTCTCCCGGATGGCCCC
AGGGGCCACGTCGGCGATCAGTTTGGCCAGTCCTTGAATCCCCATAGCAGTGCGGAGGAG
GGCCGGCTGGCCTCTGGGACGTGAAGCCTCGGCAGCTGGCGATTGCTCCTGTGTGGCCCA
GGGCCGACCTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q58DH8_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58DH8_BOVIN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               716-834, - strand, RNAz p=0.967613
               

               
               1315-1514, - strand, RNAz p=0.744903
               

               
               1755-1874, - strand, RNAz p=0.670135

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               716-834, - strand, RNAz p=0.967613
               

               
               1315-1514, - strand, RNAz p=0.744903
               

               
               1755-1874, - strand, RNAz p=0.670135

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_004111, -
               

               
               3' of NM_004111, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004111, -
               

               
               3' of NM_004111, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-1918, gnl|bosTau2|chr29 (31729327-31727453)
               

               
               23-1918, gnl|Hg17|chr11 (61321286-61319394)
               

               
               23-1918, gnl|Mm7|chr19 (9879263-9881217)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1918, gnl|bosTau2|chr29 (31729327-31727453)
               

               
               23-1918, gnl|Hg17|chr11 (61321286-61319394)
               

               
               23-1918, gnl|Mm7|chr19 (9879263-9881217)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               elu (0.385356)
               

               
               sto (0.359648)
               

               
               cje (0.330469)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               cje (0.330469)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	716-834, - strand, RNAz p=0.967613
	1315-1514, - strand, RNAz p=0.744903
	1755-1874, - strand, RNAz p=0.670135

	23-1918, gnl\|bosTau2\|chr29 (31729327-31727453)
	23-1918, gnl\|Hg17\|chr11 (61321286-61319394)
	23-1918, gnl\|Mm7\|chr19 (9879263-9881217)

	elu (0.385356)
	sto (0.359648)
	cje (0.330469)
	nbm (0.198649)
	col (0.195008)
	csp (0.161186)
	lnt (0.142308)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)
	jej (0.0989218)