Ss1.1-Pig4-TMW8011C21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGCTCTCTGGGGAGAATGTGCATTCTGTGCCATAGATAGTATCCTTGAAAAGATGGAA TGTTTAAGAATATGCAGGTGACACATTCTTTAGTCAACAATAACAACAAAGACAAAAATA TCTCAAATTCAGGTCCAGTTATGAAACAATGACAAAAATACTCATGGAATTTAAGAAGAG ACCCGACATTGGCAGTAGGTGCATTTCATTTCAAGTGACACAGGAATCATGACATTGGAT ATGTTTGGAAGAAGATATTCTAGCTTCTACTTAGCTCTCAGTAAACAGTATTTACAGAGC CAAAATAATGTAGATACTATTGGAATTCAGTATCCTGATCAGCCTATAGACAAAACATGG AAGCTTAATTTTTTTTATTCGGAAGTGAACTTGAAAGTAATTAATCCTGAAAAGAATAAA GAAAACAAAGAGGCTGAGAATGAGTTGGAGGAAGAGAGGTGGTAGGAAGAACAGAATTAC TCATCTATTCAACGGGGGGATGAAAAAGCCTACAGTTAATGGAAAAAAGCTAAGGGAAGA GTCACTGTTCAAAACTATAAATTAAACCAATGGAAGTATTAAAAATGGCATCAATCAAAA ATTGGGGAAGGGATAGGCAAATGAAGGGTAAGACCAGTGTAAGTTAAATCCTTATCTTTT GTAATGGGGAATTATTAAAGATTGTCTAAAGTTAATAAGTCAAGAAATTATTGTTCAAGC ATATTATTTAATGTTAGGAAGTTAGTTAACAGAATATCTAAAAAATAGACATTGTTCAAT GCATTGCCTCTAGGATATGGGACTAGGGTTAAAAGTGTGGGGTGGGAAACTGTGTTTTGC ATTTAGTCCTTCTGTGCTATTTAATTTTTTACTTTGTGCATGTATTACTTTTAAAATTTC TAATAAACTCAAATAAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGCTCTCTGGGGAGAATGTGCATTCTGTGCCATAGATAGTATCCTTGAAAAGATGGAA TGTTTAAGAATATGCAGGTGACACATTCTTTAGTCAACAATAACAACAAAGACAAAAATA TCTCAAATTCAGGTCCAGTTATGAAACAATGACAAAAATACTCATGGAATTTAAGAAGAG ACCCGACATTGGCAGTAGGTGCATTTCATTTCAAGTGACACAGGAATCATGACATTGGAT ATGTTTGGAAGAAGATATTCTAGCTTCTACTTAGCTCTCAGTAAACAGTATTTACAGAGC CAAAATAATGTAGATACTATTGGAATTCAGTATCCTGATCAGCCTATAGACAAAACATGG AAGCTTAATTTTTTTTATTCGGAAGTGAACTTGAAAGTAATTAATCCTGAAAAGAATAAA GAAAACAAAGAGGCTGAGAATGAGTTGGAGGAAGAGAGGTGGTAGGAAGAACAGAATTAC TCATCTATTCAACGGGGGGATGAAAAAGCCTACAGTTAATGGAAAAAAGCTAAGGGAAGA GTCACTGTTCAAAACTATAAATTAAACCAATGGAAGTATTAAAAATGGCATCAATCAAAA ATTGGGGAAGGGATAGGCAAATGAAGGGTAAGACCAGTGTAAGTTAAATCCTTATCTTTT GTAATGGGGAATTATTAAAGATTGTCTAAAGTTAATAAGTCAAGAAATTATTGTTCAAGC ATATTATTTAATGTTAGGAAGTTAGTTAACAGAATATCTAAAAAATAGACATTGTTCAAT GCATTGCCTCTAGGATATGGGACTAGGGTTAAAAGTGTGGGGTGGGAAACTGTGTTTTGC ATTTAGTCCTTCTGTGCTATTTAATTTTTTACTTTGTGCATGTATTACTTTTAAAATTTC TAATAAACTCAAATAAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 24-272, gnl|bosTau2|chr4 (58440697-58440439) | |
| 24-272, gnl|canFam2|chr16 (9077708-9077999) | |
| 24-272, gnl|canFam2|chr16 (9077999-9077708) | |
| 24-272, gnl|dasNov1|scaffold_49343 (7158-7468) | |
| 24-272, gnl|dasNov1|scaffold_49343 (7468-7158) | |
| 24-272, gnl|hg17|chr7 (142823548-142823844) | |
| 24-272, gnl|hg17|chr7 (142986768-142987064) | |
| 24-272, gnl|Hg17|chr7 (142987021-142986774) | |
| 24-272, gnl|loxAfr1|scaffold_28088 (24140-23815) | |
| 24-272, gnl|loxAfr1|scaffold_28088 (23815-24140) | |
| 24-272, gnl|mm7|chr6 (42611908-42611620) | |
| 24-272, gnl|mm7|chr6 (42611619-42611908) | |
| 24-272, gnl|Mm7|chr6 (42611878-42611655) | |
| 24-272, gnl|oryCun1|scaffold_172691 (50523-50212) | |
| 24-272, gnl|oryCun1|scaffold_172691 (50212-50523) | |
| 24-272, gnl|panTro1|chr6 (145677252-145676956) | |
| 24-272, gnl|panTro1|chr6 (145676956-145677252) | |
| 24-272, gnl|rheMac2|chr3 (181234920-181234625) | |
| 24-272, gnl|rheMac2|chr3 (181234625-181234920) | |
| 24-272, gnl|rn3|chr4 (70797710-70797429) | |
| 24-272, gnl|rn3|chr4 (70797428-70797710) | |
| 275-921, gnl|bosTau2|chr4 (58440235-58439582) | |
| 275-921, gnl|canFam2|chr16 (9078875-9078000) | |
| 275-921, gnl|canFam2|chr16 (9078000-9078875) | |
| 275-921, gnl|dasNov1|scaffold_49343 (8327-7469) | |
| 275-921, gnl|dasNov1|scaffold_49343 (7469-8327) | |
| 275-921, gnl|hg17|chr7 (142985900-142986767) | |
| 275-921, gnl|hg17|chr7 (142823845-142824716) | |
| 275-921, gnl|Hg17|chr7 (142986766-142986118) | |
| 275-921, gnl|loxAfr1|scaffold_28088 (22962-23814) | |
| 275-921, gnl|loxAfr1|scaffold_28088 (23814-22962) | |
| 275-921, gnl|mm7|chr6 (42610742-42611618) | |
| 275-921, gnl|mm7|chr6 (42611619-42610758) | |
| 275-921, gnl|Mm7|chr6 (42611620-42610984) | |
| 275-921, gnl|oryCun1|scaffold_172691 (49340-50211) | |
| 275-921, gnl|oryCun1|scaffold_172691 (50211-49340) | |
| 275-921, gnl|panTro1|chr6 (145676083-145676955) | |
| 275-921, gnl|panTro1|chr6 (145676955-145676083) | |
| 275-921, gnl|rheMac2|chr3 (181233746-181234624) | |
| 275-921, gnl|rheMac2|chr3 (181234624-181233746) | |
| 275-921, gnl|rn3|chr4 (70796527-70797427) | |
| 275-921, gnl|rn3|chr4 (70797428-70796543) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-272, gnl|bosTau2|chr4 (58440697-58440439) | |
| 24-272, gnl|canFam2|chr16 (9077708-9077999) | |
| 24-272, gnl|canFam2|chr16 (9077999-9077708) | |
| 24-272, gnl|dasNov1|scaffold_49343 (7158-7468) | |
| 24-272, gnl|dasNov1|scaffold_49343 (7468-7158) | |
| 24-272, gnl|hg17|chr7 (142823548-142823844) | |
| 24-272, gnl|hg17|chr7 (142986768-142987064) | |
| 24-272, gnl|Hg17|chr7 (142987021-142986774) | |
| 24-272, gnl|loxAfr1|scaffold_28088 (24140-23815) | |
| 24-272, gnl|loxAfr1|scaffold_28088 (23815-24140) | |
| 24-272, gnl|mm7|chr6 (42611908-42611620) | |
| 24-272, gnl|mm7|chr6 (42611619-42611908) | |
| 24-272, gnl|Mm7|chr6 (42611878-42611655) | |
| 24-272, gnl|oryCun1|scaffold_172691 (50523-50212) | |
| 24-272, gnl|oryCun1|scaffold_172691 (50212-50523) | |
| 24-272, gnl|panTro1|chr6 (145677252-145676956) | |
| 24-272, gnl|panTro1|chr6 (145676956-145677252) | |
| 24-272, gnl|rheMac2|chr3 (181234920-181234625) | |
| 24-272, gnl|rheMac2|chr3 (181234625-181234920) | |
| 24-272, gnl|rn3|chr4 (70797710-70797429) | |
| 24-272, gnl|rn3|chr4 (70797428-70797710) | |
| 275-921, gnl|bosTau2|chr4 (58440235-58439582) | |
| 275-921, gnl|canFam2|chr16 (9078875-9078000) | |
| 275-921, gnl|canFam2|chr16 (9078000-9078875) | |
| 275-921, gnl|dasNov1|scaffold_49343 (8327-7469) | |
| 275-921, gnl|dasNov1|scaffold_49343 (7469-8327) | |
| 275-921, gnl|hg17|chr7 (142985900-142986767) | |
| 275-921, gnl|hg17|chr7 (142823845-142824716) | |
| 275-921, gnl|Hg17|chr7 (142986766-142986118) | |
| 275-921, gnl|loxAfr1|scaffold_28088 (22962-23814) | |
| 275-921, gnl|loxAfr1|scaffold_28088 (23814-22962) | |
| 275-921, gnl|mm7|chr6 (42610742-42611618) | |
| 275-921, gnl|mm7|chr6 (42611619-42610758) | |
| 275-921, gnl|Mm7|chr6 (42611620-42610984) | |
| 275-921, gnl|oryCun1|scaffold_172691 (49340-50211) | |
| 275-921, gnl|oryCun1|scaffold_172691 (50211-49340) | |
| 275-921, gnl|panTro1|chr6 (145676083-145676955) | |
| 275-921, gnl|panTro1|chr6 (145676955-145676083) | |
| 275-921, gnl|rheMac2|chr3 (181233746-181234624) | |
| 275-921, gnl|rheMac2|chr3 (181234624-181233746) | |
| 275-921, gnl|rn3|chr4 (70796527-70797427) | |
| 275-921, gnl|rn3|chr4 (70797428-70796543) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| fco (1.25766) | |
| spc (0.340097) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| ski (0.146735) | |
| liv (0.146284) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (1.25766) | |
| spc (0.340097) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| ski (0.146735) | |
| liv (0.146284) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) |