Non-Coding RNA Search

Ss1.1-Pig4-TMW8011E16.5

Sequence:


               
               GAAGACACAAGGGCCGGGGCAGATGGAGGCGCAGGCCAGGCAAAGGGACAGTTCCTGCGG
CAGCAAGTCCTCAATCGTCAGGGCCAGCGTGGTCAAGCCTCCAGTTCGCAACCACGTCAG
ACTCGCTGATCCCAGCAAAGTAGTGTCTGCGCAGGACAGACCCGCCCCGGGGAGCTGCGG
AGAAGCAGGGGGTGGTGGCCTTGGGGGGCCCGAGGAACAGCTGGTGGGCCAGCCAGTGCA
CTTTCTCTTACAGCCAGAGCTTTGTGTGGTCGACCCTTGGAGTGACAGCCATGGCCTTCG
TGACCGGAGCTCTGGGCTTCTGGATCCCCAAGTTTCTGTTCGAGGCCCGTGTGGTCCACG
GGCTACAGCTTCCCTGCTTTCAGGAGCCATGCAGCAGCCAGGACAGCCTGATTTTTGGGG
CGCTGACTGTTGGGACTGGCATCATTGGGGTCATCCTGGGAGCAAAGGCTTCGAGTACAT
ACAAGAAAGTCAACCCTCGGGCCGAACCTCTCATCTGTGCCTCCAGCTTGCTTGCTGCAG
CCCCCTGCATCTACCTGGCTCTCATCCTGGCCCCGATCACCCTCCTGGGTTGCTATGTGT
TCCTGGCCCTCGGGGAGCTGCTTCTGTCCTGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACACAAGGGCCGGGGCAGATGGAGGCGCAGGCCAGGCAAAGGGACAGTTCCTGCGG
CAGCAAGTCCTCAATCGTCAGGGCCAGCGTGGTCAAGCCTCCAGTTCGCAACCACGTCAG
ACTCGCTGATCCCAGCAAAGTAGTGTCTGCGCAGGACAGACCCGCCCCGGGGAGCTGCGG
AGAAGCAGGGGGTGGTGGCCTTGGGGGGCCCGAGGAACAGCTGGTGGGCCAGCCAGTGCA
CTTTCTCTTACAGCCAGAGCTTTGTGTGGTCGACCCTTGGAGTGACAGCCATGGCCTTCG
TGACCGGAGCTCTGGGCTTCTGGATCCCCAAGTTTCTGTTCGAGGCCCGTGTGGTCCACG
GGCTACAGCTTCCCTGCTTTCAGGAGCCATGCAGCAGCCAGGACAGCCTGATTTTTGGGG
CGCTGACTGTTGGGACTGGCATCATTGGGGTCATCCTGGGAGCAAAGGCTTCGAGTACAT
ACAAGAAAGTCAACCCTCGGGCCGAACCTCTCATCTGTGCCTCCAGCTTGCTTGCTGCAG
CCCCCTGCATCTACCTGGCTCTCATCCTGGCCCCGATCACCCTCCTGGGTTGCTATGTGT
TCCTGGCCCTCGGGGAGCTGCTTCTGTCCTGCAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               239-406, gnl|bosTau2|chr19 (19515745-19515912)
               

               
               239-406, gnl|canFam2|chr5 (33468068-33468232)
               

               
               239-406, gnl|danRer3|chr5 (26601843-26602007)
               

               
               239-406, gnl|echTel1|scaffold_233817 (3205-3369)
               

               
               239-406, gnl|fr1|chrUn (222953291-222953436)
               

               
               239-406, gnl|hg17|chr17 (4299272-4299436)
               

               
               239-406, gnl|Hg17|chr17 (4299271-4299431)
               

               
               239-406, gnl|mm7|chr11 (72618263-72618099)
               

               
               239-406, gnl|Mm7|chr11 (72618265-72618102)
               

               
               239-406, gnl|oryCun1|scaffold_214797 (3901-4065)
               

               
               239-406, gnl|rheMac2|chr16 (4220082-4220246)
               

               
               239-406, gnl|rn3|chr10 (59436046-59435882)
               

               
               239-406, gnl|tetNig1|chr7 (1668656-1668504)
               

               
               239-406, gnl|xenTro1|scaffold_1112 (130099-129935)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-406, gnl|bosTau2|chr19 (19515745-19515912)
               

               
               239-406, gnl|canFam2|chr5 (33468068-33468232)
               

               
               239-406, gnl|danRer3|chr5 (26601843-26602007)
               

               
               239-406, gnl|echTel1|scaffold_233817 (3205-3369)
               

               
               239-406, gnl|fr1|chrUn (222953291-222953436)
               

               
               239-406, gnl|hg17|chr17 (4299272-4299436)
               

               
               239-406, gnl|Hg17|chr17 (4299271-4299431)
               

               
               239-406, gnl|mm7|chr11 (72618263-72618099)
               

               
               239-406, gnl|Mm7|chr11 (72618265-72618102)
               

               
               239-406, gnl|oryCun1|scaffold_214797 (3901-4065)
               

               
               239-406, gnl|rheMac2|chr16 (4220082-4220246)
               

               
               239-406, gnl|rn3|chr10 (59436046-59435882)
               

               
               239-406, gnl|tetNig1|chr7 (1668656-1668504)
               

               
               239-406, gnl|xenTro1|scaffold_1112 (130099-129935)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	239-406, gnl\|bosTau2\|chr19 (19515745-19515912)
	239-406, gnl\|canFam2\|chr5 (33468068-33468232)
	239-406, gnl\|danRer3\|chr5 (26601843-26602007)
	239-406, gnl\|echTel1\|scaffold_233817 (3205-3369)
	239-406, gnl\|fr1\|chrUn (222953291-222953436)
	239-406, gnl\|hg17\|chr17 (4299272-4299436)
	239-406, gnl\|Hg17\|chr17 (4299271-4299431)
	239-406, gnl\|mm7\|chr11 (72618263-72618099)
	239-406, gnl\|Mm7\|chr11 (72618265-72618102)
	239-406, gnl\|oryCun1\|scaffold_214797 (3901-4065)
	239-406, gnl\|rheMac2\|chr16 (4220082-4220246)
	239-406, gnl\|rn3\|chr10 (59436046-59435882)
	239-406, gnl\|tetNig1\|chr7 (1668656-1668504)
	239-406, gnl\|xenTro1\|scaffold_1112 (130099-129935)