Non-Coding RNA Search

Ss1.1-Pig4-TMW8011F08.5

Sequence:


               
               AATGAAAAAAGACAGAAATAGGAAGTAAGCATACTTTCCAATGACTAAAGAAACAAATCT
TAGTATGTTCTTTCCCATGAAGATAGTCAGACACTGGAGGGTTCAGTTACGGGTTATGCT
ACTGTAAATATTGCAACTACAGTCAGAACAATGGCCGGGTGACTCATGCATAAAGCTTGC
TGCTAAAAATGAAAGCTGAGGTTACTAGGAAGCCTTGGGGGAGGTGGTAAACAAGGGATC
TCTGCTTTAGCCAAAGGCAGGTCAGTTATATGGCTGTGGATGAGCACAGGAAAGACACGA
GTTAGCAATGAGCAACTCACCTTACTCCCTGACCCTGATTAGGCAGAACCAGTTGTGAAG
TGAGGGCTTCTCCATGACACCATACTTCTGCCCAAAACTGCCTCTGGGAGGAGAAAATCT
ACACTTGGATATCTAGCTTCACCACAAAACACAGCTTAAAAATAACAGAAAGAAATAGAA
TTAAGCAAATAGTTATTTTTGCACTTGAACTGAAATGTACTGTACTGTAAATTATCATGA
CTCATTTTAAGTGACCTTTAAAAATCAGATGTATTTATTATGCTTAAGTAATTATAGAAA
TAAAGAAATGGGTGACAGACTGAACCTCACCTATGAATGTACAGTATGTGGATTTGTGAA
ACTGACTTGACTGTAGGAAGTCAGAAAAACTTACACTGTATCTTGTGTTTACAGTTCTGA
TTTATTCTTCTGAAAAGCCTGCTGTTTTGGAAATGCACAGTGGACATGTTGAAATAAAAA
ATACCATTTTTAAATATTTCTTAAATGATAATGATGTGACCAAATAAAAGTCCTTCGCTC
TGTAATGAATGAGACCAAATTCTGCAGGCCTTTGTTATGAGCCATTTACTGTGAAAGCTA
ATTCATAGTGCAGTAATTCCCAGCCTTTTAGAACAGGCACATTCATGGGTTCGTGGACCT
TGTGACTTCTTCCTGTCCTTAAAGTGCCATTTAAAAAAATATTAAAGTGAATTCAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAAAAAAGACAGAAATAGGAAGTAAGCATACTTTCCAATGACTAAAGAAACAAATCT
TAGTATGTTCTTTCCCATGAAGATAGTCAGACACTGGAGGGTTCAGTTACGGGTTATGCT
ACTGTAAATATTGCAACTACAGTCAGAACAATGGCCGGGTGACTCATGCATAAAGCTTGC
TGCTAAAAATGAAAGCTGAGGTTACTAGGAAGCCTTGGGGGAGGTGGTAAACAAGGGATC
TCTGCTTTAGCCAAAGGCAGGTCAGTTATATGGCTGTGGATGAGCACAGGAAAGACACGA
GTTAGCAATGAGCAACTCACCTTACTCCCTGACCCTGATTAGGCAGAACCAGTTGTGAAG
TGAGGGCTTCTCCATGACACCATACTTCTGCCCAAAACTGCCTCTGGGAGGAGAAAATCT
ACACTTGGATATCTAGCTTCACCACAAAACACAGCTTAAAAATAACAGAAAGAAATAGAA
TTAAGCAAATAGTTATTTTTGCACTTGAACTGAAATGTACTGTACTGTAAATTATCATGA
CTCATTTTAAGTGACCTTTAAAAATCAGATGTATTTATTATGCTTAAGTAATTATAGAAA
TAAAGAAATGGGTGACAGACTGAACCTCACCTATGAATGTACAGTATGTGGATTTGTGAA
ACTGACTTGACTGTAGGAAGTCAGAAAAACTTACACTGTATCTTGTGTTTACAGTTCTGA
TTTATTCTTCTGAAAAGCCTGCTGTTTTGGAAATGCACAGTGGACATGTTGAAATAAAAA
ATACCATTTTTAAATATTTCTTAAATGATAATGATGTGACCAAATAAAAGTCCTTCGCTC
TGTAATGAATGAGACCAAATTCTGCAGGCCTTTGTTATGAGCCATTTACTGTGAAAGCTA
ATTCATAGTGCAGTAATTCCCAGCCTTTTAGAACAGGCACATTCATGGGTTCGTGGACCT
TGTGACTTCTTCCTGTCCTTAAAGTGCCATTTAAAAAAATATTAAAGTGAATTCAAATTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               238-414, - strand, RNAz p=0.999313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-414, - strand, RNAz p=0.999313

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-1013, gnl|bosTau2|chr2 (2598359-2599389)
               

               
               8-1013, gnl|Hg17|chr2 (191191510-191192548)
               

               
               8-1013, gnl|Mm7|chr1 (52891660-52890678)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1013, gnl|bosTau2|chr2 (2598359-2599389)
               

               
               8-1013, gnl|Hg17|chr2 (191191510-191192548)
               

               
               8-1013, gnl|Mm7|chr1 (52891660-52890678)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pgl (0.35545)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               ret (0.128733)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               spc (0.226732)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               ute (0.132784)
               

               
               ret (0.128733)

	8-1013, gnl\|bosTau2\|chr2 (2598359-2599389)
	8-1013, gnl\|Hg17\|chr2 (191191510-191192548)
	8-1013, gnl\|Mm7\|chr1 (52891660-52890678)

	pgl (0.35545)
	pla (0.267344)
	sug (0.254582)
	spc (0.226732)
	sto (0.179824)
	mcp (0.170648)
	csp (0.161186)
	ski (0.146735)
	ute (0.132784)
	ret (0.128733)