Non-Coding RNA Search

Ss1.1-Pig4-TMW8011F22.5

Sequence:


               
               GTTCCGCCGCTGTGTCCGGGGCCGGGACCCCAGTGGCGGGGCCTGCAGGCCGCGACCTCT
TCGCCGAGGGGCTCCTCGAGTTCCTGCGACCCGCTGTGCAGCAGCTCGACTCTCACGTCC
ACGCTGTCAGAGAGAGCCAAGTAGAGCTCCGGGAACAAATTGACAACCTAGCTACCGAGC
TGTGCCGCATAAATGAGGATCAGAAAGTGGCTCTGGATCTCGACCCCTATGTAAAGAAGC
TCCTTAATGCTCGGCGACGAGTCGTCTTGGTCAATAACATCCTACAGAATGCCCAGGAAC
GGCTGAGGCGGCTAAACCACAGTGTTGCCAAGGAAACAGCCCGAAGGAGGGCAATGCTGG
ATTCAGGCGTTTATCCTCCTGGTTCCCCAAGCAAGTAACAGGCCAAAAGGTGGGGCCCAT
GGCCACAGAACAGCACAAATACTATTCTCTGGCTGCCTGTTTCCTCCAGGACTCCCTGTA
GGTGTTGGGACATCAAAAAGGCAGCCCTCTGGCTTGCATTTGAAGCACTTAAAGTCTTAC
CCATTTTTGTGGGGCCCAAAGAAACCCATGTGTGGCAGGACTCAGGATCCCAAAGGATTT
ATTATGGCTCTTGCTTCCAAGAATGAGCTGAGGCTTCTACACATTTTTTTTCCCCAGCTA
CATACTCATCAGGCCCACCTCTTCTACCATCTTCAAGCCTCATTAACAATGGAGAGGCTT
CCTCTGCTACACGCCAGGTTATTGGGGCGCCTGCAGTATCCTCTACGTGGGACTTCCAAT
TTTCCTTTATTTGCACTGAGGATTTAGAGAAAAGGGTAGGCAAAGTCAAGGTGAATGACC
CATCTACCCTCTTCTGTTGACCACATCGGCTAGACTACTACTGTAGCAGTTACTAGAACC
ATTTAATTCAATAAATGCTTAAACAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCGCCGCTGTGTCCGGGGCCGGGACCCCAGTGGCGGGGCCTGCAGGCCGCGACCTCT
TCGCCGAGGGGCTCCTCGAGTTCCTGCGACCCGCTGTGCAGCAGCTCGACTCTCACGTCC
ACGCTGTCAGAGAGAGCCAAGTAGAGCTCCGGGAACAAATTGACAACCTAGCTACCGAGC
TGTGCCGCATAAATGAGGATCAGAAAGTGGCTCTGGATCTCGACCCCTATGTAAAGAAGC
TCCTTAATGCTCGGCGACGAGTCGTCTTGGTCAATAACATCCTACAGAATGCCCAGGAAC
GGCTGAGGCGGCTAAACCACAGTGTTGCCAAGGAAACAGCCCGAAGGAGGGCAATGCTGG
ATTCAGGCGTTTATCCTCCTGGTTCCCCAAGCAAGTAACAGGCCAAAAGGTGGGGCCCAT
GGCCACAGAACAGCACAAATACTATTCTCTGGCTGCCTGTTTCCTCCAGGACTCCCTGTA
GGTGTTGGGACATCAAAAAGGCAGCCCTCTGGCTTGCATTTGAAGCACTTAAAGTCTTAC
CCATTTTTGTGGGGCCCAAAGAAACCCATGTGTGGCAGGACTCAGGATCCCAAAGGATTT
ATTATGGCTCTTGCTTCCAAGAATGAGCTGAGGCTTCTACACATTTTTTTTCCCCAGCTA
CATACTCATCAGGCCCACCTCTTCTACCATCTTCAAGCCTCATTAACAATGGAGAGGCTT
CCTCTGCTACACGCCAGGTTATTGGGGCGCCTGCAGTATCCTCTACGTGGGACTTCCAAT
TTTCCTTTATTTGCACTGAGGATTTAGAGAAAAGGGTAGGCAAAGTCAAGGTGAATGACC
CATCTACCCTCTTCTGTTGACCACATCGGCTAGACTACTACTGTAGCAGTTACTAGAACC
ATTTAATTCAATAAATGCTTAAACAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57089637|ref|XP_547578.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57089637|ref|XP_547578.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               373-482, - strand, RNAz p=0.738797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               373-482, - strand, RNAz p=0.738797

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-130, gnl|bosTau2|chr3 (11128519-11128390)
               

               
               1-130, gnl|Hg17|chr1 (150444306-150444435)
               

               
               1-130, gnl|Mm7|chr3 (90621765-90621636)
               


               
               294-923, gnl|bosTau2|chr3 (11127483-11126871)
               

               
               294-923, gnl|Hg17|chr1 (150446746-150447375)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-130, gnl|bosTau2|chr3 (11128519-11128390)
               

               
               1-130, gnl|Hg17|chr1 (150444306-150444435)
               

               
               1-130, gnl|Mm7|chr3 (90621765-90621636)
               


               
               294-923, gnl|bosTau2|chr3 (11127483-11126871)
               

               
               294-923, gnl|Hg17|chr1 (150446746-150447375)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               nje (0.33184)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               nje (0.33184)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	1-130, gnl\|bosTau2\|chr3 (11128519-11128390)
	1-130, gnl\|Hg17\|chr1 (150444306-150444435)
	1-130, gnl\|Mm7\|chr3 (90621765-90621636)

	294-923, gnl\|bosTau2\|chr3 (11127483-11126871)
	294-923, gnl\|Hg17\|chr1 (150446746-150447375)

	fbs (0.350693)
	sin (0.349895)
	nje (0.33184)
	cly (0.241284)
	mas (0.210305)
	ill (0.175593)
	ton (0.1755)
	fhi (0.169578)
	cag (0.151194)
	lnt (0.142308)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)
	cbl (0.114797)
	jej (0.0989218)