Ss1.1-Pig4-TMW8011G07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAAATGATCCACACTGCCAGTCTGGTCCACGATGATGTCATTGATGACGCAAGTTCCC GGAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAGGCTGTCCTTGCTGGTG ATTTAATTCTTTCTGCAGCATCGATAGCTCTGGCACGAATTGGAAATACAACTGTTATAT CTATTTTAACCCAAGTGATTGAAGATTTGGTGCGTGGTGAATTTCTTCAGCTAGGGTCAA AAGAAAATGAGAATGAACGATTTGCACACTACCTTGAAAAGACCTTCAAGAAGACTGCCA GTCTGATCGCCAACAGTTGTAAAGCAGTCTCTGTCCTCGGCTGCCCTGACCCCGCGGTAC ATGAGATCGCCTATCAATACGGGAAGAACGTGGGGATCGCCTTCCAGCTCATAGACGACG TCCTGGACTTTACCTCGTGTTCTGACCAGATGGGCAAACCGACCTCGGCCGACCTGAAGC TCGGCTTAGCCACAGGCCCTGTCTTATTCGCTTGTCAGCAGTTTCCAGAAATGAACGCTA TGATAATGAGACGGTTCAGTTTGCCAGGAGACGTGGACAGAGCACGACAATACGTATTAC AGAGCGATGGTGTGCAGCAGACAACCTACCTCGCCCAGCGGTACTGCCATGAAGCAATCA GAGAAATCAGTAAACTTCGACCATCCCCAGAGAGAGAGGCCCTCATACAACTTTCGGAAA TTGTGCTCACAAGAGATAAATGACAACTCTTTGTGTTATTTCTGGCAGCTATTTTACCAG ACTGTGCCTAAAGAATTTTGTGGAATATACTTTGCTTCATGTGCGGATAACCAAAAATCA TTTTAAAAAATCATTTCCACCTTATTGGATTTTTTTTATTAGCAAAGTTTTTCAGAAAAC TTTTTAAATATAATTAAACCATCTGACTCTGTCAATCTAGTCCTGTAACTTATCTTGATG GTTCTATGTGGTATTGTTTACACAGTTAATATCCACATGGAAAGCCATTACACAAATAAA CAATCAATGTTAAAATTCAAATGGTTTATCTTGTTTCACCATAGGAGTAAAGATCATAAA ATTGTGATGTCTACATTTCAATCCACATTAGACTTTTACAGTATTCAAAATTTCATATAG AGAATGGTTTATTATAAAAGACTGTACATAAAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAAATGATCCACACTGCCAGTCTGGTCCACGATGATGTCATTGATGACGCAAGTTCCC GGAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAGGCTGTCCTTGCTGGTG ATTTAATTCTTTCTGCAGCATCGATAGCTCTGGCACGAATTGGAAATACAACTGTTATAT CTATTTTAACCCAAGTGATTGAAGATTTGGTGCGTGGTGAATTTCTTCAGCTAGGGTCAA AAGAAAATGAGAATGAACGATTTGCACACTACCTTGAAAAGACCTTCAAGAAGACTGCCA GTCTGATCGCCAACAGTTGTAAAGCAGTCTCTGTCCTCGGCTGCCCTGACCCCGCGGTAC ATGAGATCGCCTATCAATACGGGAAGAACGTGGGGATCGCCTTCCAGCTCATAGACGACG TCCTGGACTTTACCTCGTGTTCTGACCAGATGGGCAAACCGACCTCGGCCGACCTGAAGC TCGGCTTAGCCACAGGCCCTGTCTTATTCGCTTGTCAGCAGTTTCCAGAAATGAACGCTA TGATAATGAGACGGTTCAGTTTGCCAGGAGACGTGGACAGAGCACGACAATACGTATTAC AGAGCGATGGTGTGCAGCAGACAACCTACCTCGCCCAGCGGTACTGCCATGAAGCAATCA GAGAAATCAGTAAACTTCGACCATCCCCAGAGAGAGAGGCCCTCATACAACTTTCGGAAA TTGTGCTCACAAGAGATAAATGACAACTCTTTGTGTTATTTCTGGCAGCTATTTTACCAG ACTGTGCCTAAAGAATTTTGTGGAATATACTTTGCTTCATGTGCGGATAACCAAAAATCA TTTTAAAAAATCATTTCCACCTTATTGGATTTTTTTTATTAGCAAAGTTTTTCAGAAAAC TTTTTAAATATAATTAAACCATCTGACTCTGTCAATCTAGTCCTGTAACTTATCTTGATG GTTCTATGTGGTATTGTTTACACAGTTAATATCCACATGGAAAGCCATTACACAAATAAA CAATCAATGTTAAAATTCAAATGGTTTATCTTGTTTCACCATAGGAGTAAAGATCATAAA ATTGTGATGTCTACATTTCAATCCACATTAGACTTTTACAGTATTCAAAATTTCATATAG AGAATGGTTTATTATAAAAGACTGTACATAAAATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 869-1048, + strand, RNAz p=0.763443 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 869-1048, + strand, RNAz p=0.763443 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 103-218, gnl|bosTau2|chr13 (9243398-9243513) | |
| 103-218, gnl|canFam2|chr2 (9968635-9968530) | |
| 103-218, gnl|danRer3|chrUn (159984563-159984449) | |
| 103-218, gnl|dasNov1|scaffold_124189 (1228-1111) | |
| 103-218, gnl|echTel1|scaffold_282535 (6376-6263) | |
| 103-218, gnl|fr1|chrUn (134051382-134051289) | |
| 103-218, gnl|galGal2|chr2 (15431727-15431642) | |
| 103-218, gnl|hg17|chr10 (27052706-27052821) | |
| 103-218, gnl|Hg17|chr10 (27052739-27052854) | |
| 103-218, gnl|loxAfr1|scaffold_26745 (7714-7822) | |
| 103-218, gnl|mm7|chr2 (22952128-22952231) | |
| 103-218, gnl|Mm7|chr2 (22952149-22952264) | |
| 103-218, gnl|monDom2|scaffold_7 (41685859-41685740) | |
| 103-218, gnl|panTro1|chr8 (27331060-27331175) | |
| 103-218, gnl|rheMac2|chr9 (26836277-26836392) | |
| 103-218, gnl|tetNig1|chr6 (5602669-5602580) | |
| 103-218, gnl|xenTro1|scaffold_42 (950416-950324) | |
| 403-521, gnl|bosTau2|chr13 (9250942-9251060) | |
| 403-521, gnl|canFam2|chr2 (9959691-9959551) | |
| 403-521, gnl|danRer3|chrUn (159982565-159982435) | |
| 403-521, gnl|echTel1|scaffold_185867 (8770-8631) | |
| 403-521, gnl|fr1|chrUn (134050823-134050698) | |
| 403-521, gnl|galGal2|chr2 (15424636-15424499) | |
| 403-521, gnl|hg17|chr10 (27064384-27064524) | |
| 403-521, gnl|Hg17|chr10 (27064394-27064514) | |
| 403-521, gnl|loxAfr1|scaffold_59546 (12291-12151) | |
| 403-521, gnl|monDom2|scaffold_7 (41672394-41672258) | |
| 403-521, gnl|oryCun1|scaffold_168552 (2230-2092) | |
| 403-521, gnl|panTro1|chr8 (27342720-27342860) | |
| 403-521, gnl|rheMac2|chr9 (26847943-26848083) | |
| 403-521, gnl|tetNig1|chr6 (5602138-5601998) | |
| 601-1176, gnl|bosTau2|chr13 (9259642-9260234) | |
| 601-1176, gnl|Hg17|chr10 (27075266-27075873) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-218, gnl|bosTau2|chr13 (9243398-9243513) | |
| 103-218, gnl|canFam2|chr2 (9968635-9968530) | |
| 103-218, gnl|danRer3|chrUn (159984563-159984449) | |
| 103-218, gnl|dasNov1|scaffold_124189 (1228-1111) | |
| 103-218, gnl|echTel1|scaffold_282535 (6376-6263) | |
| 103-218, gnl|fr1|chrUn (134051382-134051289) | |
| 103-218, gnl|galGal2|chr2 (15431727-15431642) | |
| 103-218, gnl|hg17|chr10 (27052706-27052821) | |
| 103-218, gnl|Hg17|chr10 (27052739-27052854) | |
| 103-218, gnl|loxAfr1|scaffold_26745 (7714-7822) | |
| 103-218, gnl|mm7|chr2 (22952128-22952231) | |
| 103-218, gnl|Mm7|chr2 (22952149-22952264) | |
| 103-218, gnl|monDom2|scaffold_7 (41685859-41685740) | |
| 103-218, gnl|panTro1|chr8 (27331060-27331175) | |
| 103-218, gnl|rheMac2|chr9 (26836277-26836392) | |
| 103-218, gnl|tetNig1|chr6 (5602669-5602580) | |
| 103-218, gnl|xenTro1|scaffold_42 (950416-950324) | |
| 403-521, gnl|bosTau2|chr13 (9250942-9251060) | |
| 403-521, gnl|canFam2|chr2 (9959691-9959551) | |
| 403-521, gnl|danRer3|chrUn (159982565-159982435) | |
| 403-521, gnl|echTel1|scaffold_185867 (8770-8631) | |
| 403-521, gnl|fr1|chrUn (134050823-134050698) | |
| 403-521, gnl|galGal2|chr2 (15424636-15424499) | |
| 403-521, gnl|hg17|chr10 (27064384-27064524) | |
| 403-521, gnl|Hg17|chr10 (27064394-27064514) | |
| 403-521, gnl|loxAfr1|scaffold_59546 (12291-12151) | |
| 403-521, gnl|monDom2|scaffold_7 (41672394-41672258) | |
| 403-521, gnl|oryCun1|scaffold_168552 (2230-2092) | |
| 403-521, gnl|panTro1|chr8 (27342720-27342860) | |
| 403-521, gnl|rheMac2|chr9 (26847943-26848083) | |
| 403-521, gnl|tetNig1|chr6 (5602138-5601998) | |
| 601-1176, gnl|bosTau2|chr13 (9259642-9260234) | |
| 601-1176, gnl|Hg17|chr10 (27075266-27075873) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| thg (0.380373) | |
| bla (0.248694) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| sto (0.179824) | |
| rec (0.17307) | |
| lin (0.145603) | |
| che (0.136314) | |
| kid (0.129735) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| bla (0.248694) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| sto (0.179824) | |
| rec (0.17307) | |
| lin (0.145603) | |
| che (0.136314) | |
| kid (0.129735) | |
| cty (0.10408) | |
| jej (0.0989218) |