Non-Coding RNA Search

Ss1.1-Pig4-TMW8011H01.3

Sequence:


               
               AAATTGATAAACTGTGCATACTTCATTCACAACAGATTTTCTATACATTCTACATTTAAA
CAGAAGTACACAGTTACTGTTAAAGATGCAGTATTATCTATCAAATGTTTTGCTTTATTA
CTGTTTTATAAAATTTGTCAGGATAAACTTAATGTGTTAGGAATTAAACATGTACATTTA
GGTGCCAAATATGATTGTTAACCATATGTAATTTATTAATATGTTCAGAGTTTATCTCAG
ACTGTTACAGAAAATAAGCAGTATTTCTAAATGAAGTCCTAAATTAGTGTAATCGTAAAT
AACAAAAATTAATTTGAATTACTTTTAAACTTTTTAGGCCAAAGGTAGCATGTAGGAAAC
TATCTTCTAAATGGGTATTGTGGTAGAATATAAATGTATATTTTTACTGTTACTGTAATA
GCATCTCTGATGGGATTTGTAGGTGATATACTGCATCCTTAATTGTAATTGAGTGTAGCA
ACACTCATGTATCGTGTAGAAATTAACACTTGCAGTTAACTGCTTAAAAAAAACTGGAAC
AAATTGTCAGTGCTAAGTAAGATTCCATTAACCTTATTTTAAAAAGGACTGGCCATTTAT
AACAAACTAGCAATTTTTATTTTTCTCAATGAGCAGGATCTGGAACTCCTAAGCCATCTA
CTCCTACACCAACCCCTTCATCGACCCCACACCCTCCTGATGCTCAGAGTTCAACTCCTA
TTACCCCTTCAGCTACCCCTACTCCCCAAGATTCAGGCTTCACCCCTCAGCCCACTTTGT
TAACTCAGTTTGCTCAGCAGCAAAAGTCTCTGAGCCAGGCAATGCCTGTAACGACCATTC
CTCTTTCCACCATGGTAACATCCATAACTACAGGAACCACGGCCACCCAGGTCATGGCAA
ACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGAGCTCAAGCCTTGA
TGAGTGGTTCAAACCCTGTGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAA
ACCTGAGTGGCCTTCTACCCTCAGGAGGTCTGCTACCAAATGCATTGCCCGGTACAATGC
AGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATACTTCAAGTCTCAGGCCCT
TAAATCTACTTCAGCTTCCAGGTGGTTCGCTCATTTTTAACACTCTACAGCAGCAGCAAC
AGCAGCTTTCTCAGTTTACACCACAGCAACCTCAACAACCCACAACTTCCAGTCCTCAAC
AGCCAGGGGAGCAGGGTTCTGAACAAAGTTCAGCCAGTCAAGAACAGGCCTTATCTGCAC
AGCATGCTGCCGTTATTAACCTTGCCGGAGTAGGAAGTTTTATGCAGCCACAGGCAGCTG
CAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGCAGCAGCAGCACAAACAGCTCAG
CTACATCGGCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAAAGAGGCACACCA
GCCACTCCAAAATTCTGAGTCCTATTTTTTTCTTTTTAGAAACTTAAGAGCATTGAATCA
AAAGGATTCTGAGTTTCTACTTCATTTTTGTTTTTTAAAATGTGTCAGTATTTTCATTGC
TGGATACAAACTTTATACAGAAGCACAACCCTTAAATAAAAACAGCAAAATGGTTTAATG
AACCATTAGGGTTGGTTTGCCTCAGTCACTGCTTTTTAAAAATGGTTTCACTGTACATAA
ATGGAAGTGACCTAAGAAATACTAGAAACATCTTTCAGAAGACTGTAGTTTGATATTTAT
TTAGTATAAAAGGTTTGTGCACAGTGTAAACAAATACAGTTTTTACAAATTTGTTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTGATAAACTGTGCATACTTCATTCACAACAGATTTTCTATACATTCTACATTTAAA
CAGAAGTACACAGTTACTGTTAAAGATGCAGTATTATCTATCAAATGTTTTGCTTTATTA
CTGTTTTATAAAATTTGTCAGGATAAACTTAATGTGTTAGGAATTAAACATGTACATTTA
GGTGCCAAATATGATTGTTAACCATATGTAATTTATTAATATGTTCAGAGTTTATCTCAG
ACTGTTACAGAAAATAAGCAGTATTTCTAAATGAAGTCCTAAATTAGTGTAATCGTAAAT
AACAAAAATTAATTTGAATTACTTTTAAACTTTTTAGGCCAAAGGTAGCATGTAGGAAAC
TATCTTCTAAATGGGTATTGTGGTAGAATATAAATGTATATTTTTACTGTTACTGTAATA
GCATCTCTGATGGGATTTGTAGGTGATATACTGCATCCTTAATTGTAATTGAGTGTAGCA
ACACTCATGTATCGTGTAGAAATTAACACTTGCAGTTAACTGCTTAAAAAAAACTGGAAC
AAATTGTCAGTGCTAAGTAAGATTCCATTAACCTTATTTTAAAAAGGACTGGCCATTTAT
AACAAACTAGCAATTTTTATTTTTCTCAATGAGCAGGATCTGGAACTCCTAAGCCATCTA
CTCCTACACCAACCCCTTCATCGACCCCACACCCTCCTGATGCTCAGAGTTCAACTCCTA
TTACCCCTTCAGCTACCCCTACTCCCCAAGATTCAGGCTTCACCCCTCAGCCCACTTTGT
TAACTCAGTTTGCTCAGCAGCAAAAGTCTCTGAGCCAGGCAATGCCTGTAACGACCATTC
CTCTTTCCACCATGGTAACATCCATAACTACAGGAACCACGGCCACCCAGGTCATGGCAA
ACTCTGCTGGACTTAACTTCATCAATGTAGTGGGCTCTGTTTGTGGAGCTCAAGCCTTGA
TGAGTGGTTCAAACCCTGTGCTGGGCTGTAACACTGGTGCCATAACTCCTGCAGGAATAA
ACCTGAGTGGCCTTCTACCCTCAGGAGGTCTGCTACCAAATGCATTGCCCGGTACAATGC
AGGCAGCTTCTCAAGCAGGTGTTCCATTTGGTTTAAAAAATACTTCAAGTCTCAGGCCCT
TAAATCTACTTCAGCTTCCAGGTGGTTCGCTCATTTTTAACACTCTACAGCAGCAGCAAC
AGCAGCTTTCTCAGTTTACACCACAGCAACCTCAACAACCCACAACTTCCAGTCCTCAAC
AGCCAGGGGAGCAGGGTTCTGAACAAAGTTCAGCCAGTCAAGAACAGGCCTTATCTGCAC
AGCATGCTGCCGTTATTAACCTTGCCGGAGTAGGAAGTTTTATGCAGCCACAGGCAGCTG
CAGTTGCGATTCTTGCAGCATCAAATGGCTATGGCAGCAGCAGCAGCACAAACAGCTCAG
CTACATCGGCATCGGCATACAGGCAGCCAGTCAAAAAGTAAAATGAAAAGAGGCACACCA
GCCACTCCAAAATTCTGAGTCCTATTTTTTTCTTTTTAGAAACTTAAGAGCATTGAATCA
AAAGGATTCTGAGTTTCTACTTCATTTTTGTTTTTTAAAATGTGTCAGTATTTTCATTGC
TGGATACAAACTTTATACAGAAGCACAACCCTTAAATAAAAACAGCAAAATGGTTTAATG
AACCATTAGGGTTGGTTTGCCTCAGTCACTGCTTTTTAAAAATGGTTTCACTGTACATAA
ATGGAAGTGACCTAAGAAATACTAGAAACATCTTTCAGAAGACTGTAGTTTGATATTTAT
TTAGTATAAAAGGTTTGTGCACAGTGTAAACAAATACAGTTTTTACAAATTTGTTTTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q71RF3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71RF3_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-118, - strand, RNAz p=0.755852
               

               
               427-577, + strand, RNAz p=0.970657
               

               
               698-857, - strand, RNAz p=0.953707

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.755852
               

               
               427-577, + strand, RNAz p=0.970657
               

               
               698-857, - strand, RNAz p=0.953707

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-943, gnl|bosTau2|chr12 (14820851-14819893)
               

               
               1-943, gnl|Hg17|chr13 (36495098-36494148)
               

               
               1-943, gnl|Mm7|chr3 (54845921-54846854)
               


               
               1659-1860, gnl|bosTau2|chr1 (93517032-93517229)
               

               
               1659-1860, gnl|Hg17|chr13 (36481654-36481451)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-943, gnl|bosTau2|chr12 (14820851-14819893)
               

               
               1-943, gnl|Hg17|chr13 (36495098-36494148)
               

               
               1-943, gnl|Mm7|chr3 (54845921-54846854)
               


               
               1659-1860, gnl|bosTau2|chr1 (93517032-93517229)
               

               
               1659-1860, gnl|Hg17|chr13 (36481654-36481451)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

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               fce (0.814775)
               

               
               fat (0.58971)
               

               
               cmu (0.55918)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.814775)
               

               
               fat (0.58971)
               

               
               cmu (0.55918)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-118, - strand, RNAz p=0.755852
	427-577, + strand, RNAz p=0.970657
	698-857, - strand, RNAz p=0.953707

	1-943, gnl\|bosTau2\|chr12 (14820851-14819893)
	1-943, gnl\|Hg17\|chr13 (36495098-36494148)
	1-943, gnl\|Mm7\|chr3 (54845921-54846854)

	1659-1860, gnl\|bosTau2\|chr1 (93517032-93517229)
	1659-1860, gnl\|Hg17\|chr13 (36481654-36481451)

	fce (0.814775)
	fat (0.58971)
	cmu (0.55918)
	lun (0.451467)
	csk (0.422238)
	eye (0.341006)
	cut (0.339847)
	cki (0.330469)
	mga (0.32041)
	cte (0.29274)
	liv (0.292569)
	spl (0.286369)
	lyg (0.266205)
	kid (0.259471)
	sug (0.254582)
	thg (0.253582)
	ese (0.253004)
	bla (0.248694)
	cbe (0.239234)
	pan (0.23596)
	med (0.232504)
	mgp (0.230681)
	hea (0.204499)
	fli (0.202881)
	eje (0.197668)
	nlu (0.191681)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	sin (0.174948)
	duo (0.172801)
	cje (0.165235)
	tbr (0.154178)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	ute (0.132784)
	ova (0.129132)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)