Ss1.1-Pig4-TMW8011H07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTTGTCCTTGATCTGGATAAATCTATAAAAATTGTGAAGAAATTAAAGCTAACTGGCT TTCCATATAAAATTTTCAAGAACACTTCATTCATTAAGGGAATGTTTAATTCTGCCTTGG AAGTGGCCAAATTTGAAGGTGCTGTGATTCGAACTGTCAGTGGAATAAGGGGACAGATCA AGAAGGCACTCAGGGCTCCAGAAGGAGCTTTCCGGGCCACCTTTGAGGATAAATTGCTGA TGAGTGATATTGTCTTCATGAGAACTTGGTATCCTGTCTCCGTTCCAGCCTTCTATAACC CTGTAACATCTTTGTTGAAACCAGTTGGTGAGAAAGACACCTGGTCAGGAATGCGGACAA CTGGTCAACTCCGGCTTGTCCATGGCATCAAACTAAAACCCAACAAAGATTCTCTGTATA AGCCAATTATAAGGCAAAAGAAACATTTTAATTCACTGCATATTCCAAAAGCTTTGCAGA AGGCCCTGCCATTTAAGAGCAAGCCCAAGACCCAAGCAAAGGCAGGCAAGACTCCAAAGG ACAGACTGAGACCAGCCGTCATACGGGAGCCTCATGAAAGGAAGATCCTTGCGCTGCTGG ATGCTCTGAGTACAGTGCATAGTCAGAAGATGAAGAAGGCCAAGGAGCAACGGCATCTAC ACAACAAAGAACACTTCAAAGTGAAGCAGAAGGAGGAAGAAGAGAAACTGAAGCGACAGA AGGATCTCAGGAAGAAACTCTTCCGAATTCAGGGTCAGAAGGAAAAAAGAAATCAGAAGT CCAGTCTGAAGGGGTCTGGGGAGCAGTCGATGTGAGCTCCAGACAGATAGACTGTCATTT GAGTCTGCAGTGATGAATGGTTTCATATATTGTAGTACTTGTAAATAACAGGACGGAACT GGAGCCCAAATATGACCTCTTTGTTGACTGTAGAACCCAGACTGTGCCTTTGAGGAGAGA AATGGAGACTGTTGATAGGACACCTGTTCCTCCTCAGCATCTAGGTTATGTCAAATAAAG CAATATAATTTATGGTTTTCTAGATTCCCTCACATTCCTCTCTTAGTTTAATTTTGTGCT ACAAAAATATCATTAAAATATTTTCTTGTTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTTGTCCTTGATCTGGATAAATCTATAAAAATTGTGAAGAAATTAAAGCTAACTGGCT TTCCATATAAAATTTTCAAGAACACTTCATTCATTAAGGGAATGTTTAATTCTGCCTTGG AAGTGGCCAAATTTGAAGGTGCTGTGATTCGAACTGTCAGTGGAATAAGGGGACAGATCA AGAAGGCACTCAGGGCTCCAGAAGGAGCTTTCCGGGCCACCTTTGAGGATAAATTGCTGA TGAGTGATATTGTCTTCATGAGAACTTGGTATCCTGTCTCCGTTCCAGCCTTCTATAACC CTGTAACATCTTTGTTGAAACCAGTTGGTGAGAAAGACACCTGGTCAGGAATGCGGACAA CTGGTCAACTCCGGCTTGTCCATGGCATCAAACTAAAACCCAACAAAGATTCTCTGTATA AGCCAATTATAAGGCAAAAGAAACATTTTAATTCACTGCATATTCCAAAAGCTTTGCAGA AGGCCCTGCCATTTAAGAGCAAGCCCAAGACCCAAGCAAAGGCAGGCAAGACTCCAAAGG ACAGACTGAGACCAGCCGTCATACGGGAGCCTCATGAAAGGAAGATCCTTGCGCTGCTGG ATGCTCTGAGTACAGTGCATAGTCAGAAGATGAAGAAGGCCAAGGAGCAACGGCATCTAC ACAACAAAGAACACTTCAAAGTGAAGCAGAAGGAGGAAGAAGAGAAACTGAAGCGACAGA AGGATCTCAGGAAGAAACTCTTCCGAATTCAGGGTCAGAAGGAAAAAAGAAATCAGAAGT CCAGTCTGAAGGGGTCTGGGGAGCAGTCGATGTGAGCTCCAGACAGATAGACTGTCATTT GAGTCTGCAGTGATGAATGGTTTCATATATTGTAGTACTTGTAAATAACAGGACGGAACT GGAGCCCAAATATGACCTCTTTGTTGACTGTAGAACCCAGACTGTGCCTTTGAGGAGAGA AATGGAGACTGTTGATAGGACACCTGTTCCTCCTCAGCATCTAGGTTATGTCAAATAAAG CAATATAATTTATGGTTTTCTAGATTCCCTCACATTCCTCTCTTAGTTTAATTTTGTGCT ACAAAAATATCATTAAAATATTTTCTTGTTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 93 entry(ies) | More info |
| Aligned organism(s): 93 entry(ies) | Help | Less info |
| 246-422, gnl|bosTau2|chr28 (9328585-9328761) | |
| 246-422, gnl|canFam2|chr28 (7183140-7182924) | |
| 246-422, gnl|canFam2|chr28 (7182924-7183140) | |
| 246-422, gnl|canFam2|chr28 (7182922-7183118) | |
| 246-422, gnl|canFam2|chr28 (7183116-7182914) | |
| 246-422, gnl|canFam2|chr28 (7183140-7182924) | |
| 246-422, gnl|canFam2|chr28 (7183116-7182931) | |
| 246-422, gnl|danRer3|chr12 (23977448-23977653) | |
| 246-422, gnl|danRer3|chr12 (23977653-23977448) | |
| 246-422, gnl|danRer3|chr12 (23977651-23977466) | |
| 246-422, gnl|danRer3|chr12 (23977466-23977651) | |
| 246-422, gnl|danRer3|chr12 (23977448-23977651) | |
| 246-422, gnl|danRer3|chr12 (23977466-23977651) | |
| 246-422, gnl|dasNov1|scaffold_5136 (20018-19800) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19800-20018) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19791-20001) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19999-19800) | |
| 246-422, gnl|dasNov1|scaffold_5136 (20018-19791) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19999-19814) | |
| 246-422, gnl|echTel1|scaffold_260545 (3433-3211) | |
| 246-422, gnl|echTel1|scaffold_260545 (3211-3433) | |
| 246-422, gnl|echTel1|scaffold_260545 (3202-3412) | |
| 246-422, gnl|echTel1|scaffold_260545 (3410-3211) | |
| 246-422, gnl|echTel1|scaffold_260545 (3433-3202) | |
| 246-422, gnl|echTel1|scaffold_260545 (3410-3225) | |
| 246-422, gnl|fr1|chrUn (289967489-289967284) | |
| 246-422, gnl|fr1|chrUn (289967284-289967489) | |
| 246-422, gnl|fr1|chrUn (289967297-289967481) | |
| 246-422, gnl|fr1|chrUn (289967481-289967297) | |
| 246-422, gnl|fr1|chrUn (289967509-289967297) | |
| 246-422, gnl|fr1|chrUn (289967481-289967297) | |
| 246-422, gnl|galGal2|chr6 (4504041-4503824) | |
| 246-422, gnl|galGal2|chr6 (4503824-4504041) | |
| 246-422, gnl|galGal2|chr6 (4503824-4504024) | |
| 246-422, gnl|galGal2|chr6 (4504022-4503824) | |
| 246-422, gnl|galGal2|chr6 (4504046-4503838) | |
| 246-422, gnl|galGal2|chr6 (4504022-4503838) | |
| 246-422, gnl|hg17|chr10 (42639033-42639265) | |
| 246-422, gnl|Hg17|chr10 (42639062-42639238) | |
| 246-422, gnl|hg17|chr14 (18740916-18741137) | |
| 246-422, gnl|hg17|chr15 (18625912-18626111) | |
| 246-422, gnl|hg17|chr16 (33404883-33405091) | |
| 246-422, gnl|hg17|chr22 (14551922-14552143) | |
| 246-422, gnl|hg17|chr9 (65534250-65534435) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29560-29778) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29778-29560) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29787-29577) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29579-29778) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29560-29787) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29579-29764) | |
| 246-422, gnl|mm7|chr6 (118414408-118414203) | |
| 246-422, gnl|mm7|chr6 (118414203-118414408) | |
| 246-422, gnl|mm7|chr6 (118414192-118414404) | |
| 246-422, gnl|mm7|chr6 (118414402-118414199) | |
| 246-422, gnl|mm7|chr6 (118414408-118414194) | |
| 246-422, gnl|mm7|chr6 (118414396-118414217) | |
| 246-422, gnl|Mm7|chr6 (118414395-118414219) | |
| 246-422, gnl|monDom2|scaffold_14 (9593979-9594186) | |
| 246-422, gnl|monDom2|scaffold_14 (9594186-9593979) | |
| 246-422, gnl|monDom2|scaffold_14 (9594184-9593997) | |
| 246-422, gnl|monDom2|scaffold_14 (9593999-9594184) | |
| 246-422, gnl|monDom2|scaffold_14 (9593979-9594184) | |
| 246-422, gnl|monDom2|scaffold_14 (9594000-9594184) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26336-26113) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26113-26336) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26100-26314) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26312-26109) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26336-26104) | |
| 246-422, gnl|oryCun1|scaffold_200624 (8369-8193) | |
| 246-422, gnl|panTro1|chr13 (18248160-18248381) | |
| 246-422, gnl|panTro1|chr16 (26971862-26972072) | |
| 246-422, gnl|panTro1|chr16 (26972072-26971871) | |
| 246-422, gnl|panTro1|chr16 (26972072-26971885) | |
| 246-422, gnl|panTro1|chr23 (14515479-14515700) | |
| 246-422, gnl|panTro1|chr23 (14515479-14515709) | |
| 246-422, gnl|rheMac2|chr9 (42970572-42970795) | |
| 246-422, gnl|rheMac2|chr9 (42970795-42970572) | |
| 246-422, gnl|rheMac2|chr9 (42970804-42970594) | |
| 246-422, gnl|rheMac2|chr9 (42970596-42970795) | |
| 246-422, gnl|rheMac2|chr9 (42970572-42970804) | |
| 246-422, gnl|rheMac2|chr9 (42970596-42970781) | |
| 246-422, gnl|tetNig1|chrUn_random (41796213-41796036) | |
| 246-422, gnl|tetNig1|chrUn_random (41796220-41796036) | |
| 246-422, gnl|tetNig1|chrUn_random (41796036-41796220) | |
| 246-422, gnl|tetNig1|chrUn_random (41796036-41796220) | |
| 246-422, gnl|tetNig1|chrUn_random (41796036-41796220) | |
| 246-422, gnl|xenTro1|scaffold_937 (273613-273412) | |
| 246-422, gnl|xenTro1|scaffold_937 (273414-273598) | |
| 246-422, gnl|xenTro1|scaffold_937 (273399-273613) | |
| 246-422, gnl|xenTro1|scaffold_937 (273414-273596) | |
| 583-1112, gnl|bosTau2|chr28 (9331451-9331991) | |
| 583-1112, gnl|Hg17|chr10 (42646318-42646857) | |
| 583-1112, gnl|Mm7|chr6 (118409340-118408844) |
| Aligned organism(s): 93 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 246-422, gnl|bosTau2|chr28 (9328585-9328761) | |
| 246-422, gnl|canFam2|chr28 (7183140-7182924) | |
| 246-422, gnl|canFam2|chr28 (7182924-7183140) | |
| 246-422, gnl|canFam2|chr28 (7182922-7183118) | |
| 246-422, gnl|canFam2|chr28 (7183116-7182914) | |
| 246-422, gnl|canFam2|chr28 (7183140-7182924) | |
| 246-422, gnl|canFam2|chr28 (7183116-7182931) | |
| 246-422, gnl|danRer3|chr12 (23977448-23977653) | |
| 246-422, gnl|danRer3|chr12 (23977653-23977448) | |
| 246-422, gnl|danRer3|chr12 (23977651-23977466) | |
| 246-422, gnl|danRer3|chr12 (23977466-23977651) | |
| 246-422, gnl|danRer3|chr12 (23977448-23977651) | |
| 246-422, gnl|danRer3|chr12 (23977466-23977651) | |
| 246-422, gnl|dasNov1|scaffold_5136 (20018-19800) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19800-20018) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19791-20001) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19999-19800) | |
| 246-422, gnl|dasNov1|scaffold_5136 (20018-19791) | |
| 246-422, gnl|dasNov1|scaffold_5136 (19999-19814) | |
| 246-422, gnl|echTel1|scaffold_260545 (3433-3211) | |
| 246-422, gnl|echTel1|scaffold_260545 (3211-3433) | |
| 246-422, gnl|echTel1|scaffold_260545 (3202-3412) | |
| 246-422, gnl|echTel1|scaffold_260545 (3410-3211) | |
| 246-422, gnl|echTel1|scaffold_260545 (3433-3202) | |
| 246-422, gnl|echTel1|scaffold_260545 (3410-3225) | |
| 246-422, gnl|fr1|chrUn (289967489-289967284) | |
| 246-422, gnl|fr1|chrUn (289967284-289967489) | |
| 246-422, gnl|fr1|chrUn (289967297-289967481) | |
| 246-422, gnl|fr1|chrUn (289967481-289967297) | |
| 246-422, gnl|fr1|chrUn (289967509-289967297) | |
| 246-422, gnl|fr1|chrUn (289967481-289967297) | |
| 246-422, gnl|galGal2|chr6 (4504041-4503824) | |
| 246-422, gnl|galGal2|chr6 (4503824-4504041) | |
| 246-422, gnl|galGal2|chr6 (4503824-4504024) | |
| 246-422, gnl|galGal2|chr6 (4504022-4503824) | |
| 246-422, gnl|galGal2|chr6 (4504046-4503838) | |
| 246-422, gnl|galGal2|chr6 (4504022-4503838) | |
| 246-422, gnl|hg17|chr10 (42639033-42639265) | |
| 246-422, gnl|Hg17|chr10 (42639062-42639238) | |
| 246-422, gnl|hg17|chr14 (18740916-18741137) | |
| 246-422, gnl|hg17|chr15 (18625912-18626111) | |
| 246-422, gnl|hg17|chr16 (33404883-33405091) | |
| 246-422, gnl|hg17|chr22 (14551922-14552143) | |
| 246-422, gnl|hg17|chr9 (65534250-65534435) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29560-29778) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29778-29560) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29787-29577) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29579-29778) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29560-29787) | |
| 246-422, gnl|loxAfr1|scaffold_62937 (29579-29764) | |
| 246-422, gnl|mm7|chr6 (118414408-118414203) | |
| 246-422, gnl|mm7|chr6 (118414203-118414408) | |
| 246-422, gnl|mm7|chr6 (118414192-118414404) | |
| 246-422, gnl|mm7|chr6 (118414402-118414199) | |
| 246-422, gnl|mm7|chr6 (118414408-118414194) | |
| 246-422, gnl|mm7|chr6 (118414396-118414217) | |
| 246-422, gnl|Mm7|chr6 (118414395-118414219) | |
| 246-422, gnl|monDom2|scaffold_14 (9593979-9594186) | |
| 246-422, gnl|monDom2|scaffold_14 (9594186-9593979) | |
| 246-422, gnl|monDom2|scaffold_14 (9594184-9593997) | |
| 246-422, gnl|monDom2|scaffold_14 (9593999-9594184) | |
| 246-422, gnl|monDom2|scaffold_14 (9593979-9594184) | |
| 246-422, gnl|monDom2|scaffold_14 (9594000-9594184) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26336-26113) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26113-26336) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26100-26314) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26312-26109) | |
| 246-422, gnl|oryCun1|scaffold_149950 (26336-26104) | |
| 246-422, gnl|oryCun1|scaffold_200624 (8369-8193) | |
| 246-422, gnl|panTro1|chr13 (18248160-18248381) | |
| 246-422, gnl|panTro1|chr16 (26971862-26972072) | |
| 246-422, gnl|panTro1|chr16 (26972072-26971871) | |
| 246-422, gnl|panTro1|chr16 (26972072-26971885) | |
| 246-422, gnl|panTro1|chr23 (14515479-14515700) | |
| 246-422, gnl|panTro1|chr23 (14515479-14515709) | |
| 246-422, gnl|rheMac2|chr9 (42970572-42970795) | |
| 246-422, gnl|rheMac2|chr9 (42970795-42970572) | |
| 246-422, gnl|rheMac2|chr9 (42970804-42970594) | |
| 246-422, gnl|rheMac2|chr9 (42970596-42970795) | |
| 246-422, gnl|rheMac2|chr9 (42970572-42970804) | |
| 246-422, gnl|rheMac2|chr9 (42970596-42970781) | |
| 246-422, gnl|tetNig1|chrUn_random (41796213-41796036) | |
| 246-422, gnl|tetNig1|chrUn_random (41796220-41796036) | |
| 246-422, gnl|tetNig1|chrUn_random (41796036-41796220) | |
| 246-422, gnl|tetNig1|chrUn_random (41796036-41796220) | |
| 246-422, gnl|tetNig1|chrUn_random (41796036-41796220) | |
| 246-422, gnl|xenTro1|scaffold_937 (273613-273412) | |
| 246-422, gnl|xenTro1|scaffold_937 (273414-273598) | |
| 246-422, gnl|xenTro1|scaffold_937 (273399-273613) | |
| 246-422, gnl|xenTro1|scaffold_937 (273414-273596) | |
| 583-1112, gnl|bosTau2|chr28 (9331451-9331991) | |
| 583-1112, gnl|Hg17|chr10 (42646318-42646857) | |
| 583-1112, gnl|Mm7|chr6 (118409340-118408844) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| amn (0.417711) | |
| liv (0.292569) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| sin (0.174948) | |
| eye (0.170503) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| liv (0.292569) | |
| tra (0.246184) | |
| cbl (0.229595) | |
| spc (0.226732) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| sin (0.174948) | |
| eye (0.170503) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| med (0.116252) | |
| nbm (0.0993246) |