Non-Coding RNA Search

Ss1.1-Pig4-TMW8011I07.3

Sequence:


               
               AAGAAATTGAAGGAGGAAATGGAAGGGGTAGTTAAAGAACTTGCCGAAAATAATCACATT
TTAGAAAGGTTTGGCTCTTTAACCATGGATGGTGGCCTTCGCAATGTTGACTGTCTTTAG
CTTTATAAAGAATTTGAGAAAGTTTCAGTTTGCACAAGAAAAATACTGAGGCATTAAATG
AATGCCTCTAGGTGGTCTCTTGTTTCTCCATTTCACTGTTGGATGTTGTCTTGTAAATAT
GTATGATACTGTAAATACATAAAAAAATATAAATTTTTGGCTGCTGTTAAGATGTAATTT
TACCTTTTAACATTTGTAATTACATGAGGACGTTTGACCTCAGTGAGCTCTTAGAAGAAA
GCCATGACCAGTATGTTGAGATACTGATCCTCTACTCTTCTGAGTAAGGTTAATTAAGTC
ATATGTCTCTGATTGGAAACATTTTTAACTGGAACCAAAAGTGGCATCTTTACAAATCAT
TGAAGGCTGATGGTTGACACGTTGTAATCAGTACAATGGAGAGGTAGCTTCTGGGAGTGG
GGAGCAGCGCCGAACCACTGTTCTACTAGGATTACAGTTTTTTTGAGAAGGATGAAGTGG
CATTATCCCAGTTACCCTCATATCTGTTTAATTTCAGGTAACTTATTAAGCAGATTTTTT
TAAGTGATTTAATTCTTAAAAACTGTTCATTTTCATTTTGGCCATAAATGTATAATTGTC
ATAAAAATTTTAGAATCATTTCAACTGTTTTAAGCTGTATATTCTTTAATTCTGCTTACT
ACTTCATGAAGAAATATCAATAAATTTCTCAATTTTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAATTGAAGGAGGAAATGGAAGGGGTAGTTAAAGAACTTGCCGAAAATAATCACATT
TTAGAAAGGTTTGGCTCTTTAACCATGGATGGTGGCCTTCGCAATGTTGACTGTCTTTAG
CTTTATAAAGAATTTGAGAAAGTTTCAGTTTGCACAAGAAAAATACTGAGGCATTAAATG
AATGCCTCTAGGTGGTCTCTTGTTTCTCCATTTCACTGTTGGATGTTGTCTTGTAAATAT
GTATGATACTGTAAATACATAAAAAAATATAAATTTTTGGCTGCTGTTAAGATGTAATTT
TACCTTTTAACATTTGTAATTACATGAGGACGTTTGACCTCAGTGAGCTCTTAGAAGAAA
GCCATGACCAGTATGTTGAGATACTGATCCTCTACTCTTCTGAGTAAGGTTAATTAAGTC
ATATGTCTCTGATTGGAAACATTTTTAACTGGAACCAAAAGTGGCATCTTTACAAATCAT
TGAAGGCTGATGGTTGACACGTTGTAATCAGTACAATGGAGAGGTAGCTTCTGGGAGTGG
GGAGCAGCGCCGAACCACTGTTCTACTAGGATTACAGTTTTTTTGAGAAGGATGAAGTGG
CATTATCCCAGTTACCCTCATATCTGTTTAATTTCAGGTAACTTATTAAGCAGATTTTTT
TAAGTGATTTAATTCTTAAAAACTGTTCATTTTCATTTTGGCCATAAATGTATAATTGTC
ATAAAAATTTTAGAATCATTTCAACTGTTTTAAGCTGTATATTCTTTAATTCTGCTTACT
ACTTCATGAAGAAATATCAATAAATTTCTCAATTTTAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               544-825, gnl|bosTau2|chr24 (28736861-28736585)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               544-825, gnl|bosTau2|chr24 (28736861-28736585)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               sto (0.539471)
               

               
               sag (0.36543)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.539471)
               

               
               sag (0.36543)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)

	sto (0.539471)
	sag (0.36543)
	mga (0.32041)
	sme (0.305437)
	bfe (0.299715)
	cte (0.29274)
	csk (0.281492)
	tra (0.246184)
	pgl (0.236967)
	mgp (0.230681)
	aor (0.195274)
	col (0.195008)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)