Non-Coding RNA Search

Ss1.1-Pig4-TMW8011I15.5

Sequence:


               
               AGAATTGGTTAGCAGATTTTAGGTTTGAGGGAATGTCCACAGAAAATAGGCCAAAAAAAA
AAAAAAGATATAAAAAACAGCTTTTTAGTCTAAAGCTCATTACTGATGATAAATATTTAA
ATATTTATAACTCGCTTTAGCAAAGGGCATTACTAAGACTACTTTACTTATTTGTGATGA
AACATTTGTTGCGTGAACCTCGGTGGACCAGTTTCAATCTCTTTATTCAGGAAACCTTGA
CACTTATTTCTAGAATAGTAGTTTGACTTTAATTCTGTAACTACTAACTTTGAGTGAGTT
TGACAGGAAAGTACATGTGGGGTGTGGAGCAATGAATTTAAGCCCCAATACAGCTAAATC
CATTTAAGATTTCACAAAATCTAGGGTAGCTAGCATTGTGAATGCAATTTCCAAATATCT
ATTTGTACTTAAGAGTAAATATAATGTTTAGGAGATGTTTCGTGGTTTGGATTTATATAT
TTATAAGGATTTTAAAAAATGTTCATTTTGTCTGAAATGTAACATCAAATAAATTGAGTT
ATATGATGAGATTTCTAGAAAGCAATGGGTATGGGTACTATGTATTTTGCTTATTTGTAT
GTCTGCAGTGCTAAATTTGTGTCTCTCTTTGTATTGTGATAGTCTTTTTTTTTAGTTGTC
AGTATGTTATTCGGGTATTAAAGAGTTTTAAATGTATGACAACAAGAAACTTTTCATACT
CTTGAATTAAAAGAGGACAGCGCGACAATATTTTATTTATTGTGGTGATATTTGGTTTGT
CCATTAAATTCCTATTATTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTGGTTAGCAGATTTTAGGTTTGAGGGAATGTCCACAGAAAATAGGCCAAAAAAAA
AAAAAAGATATAAAAAACAGCTTTTTAGTCTAAAGCTCATTACTGATGATAAATATTTAA
ATATTTATAACTCGCTTTAGCAAAGGGCATTACTAAGACTACTTTACTTATTTGTGATGA
AACATTTGTTGCGTGAACCTCGGTGGACCAGTTTCAATCTCTTTATTCAGGAAACCTTGA
CACTTATTTCTAGAATAGTAGTTTGACTTTAATTCTGTAACTACTAACTTTGAGTGAGTT
TGACAGGAAAGTACATGTGGGGTGTGGAGCAATGAATTTAAGCCCCAATACAGCTAAATC
CATTTAAGATTTCACAAAATCTAGGGTAGCTAGCATTGTGAATGCAATTTCCAAATATCT
ATTTGTACTTAAGAGTAAATATAATGTTTAGGAGATGTTTCGTGGTTTGGATTTATATAT
TTATAAGGATTTTAAAAAATGTTCATTTTGTCTGAAATGTAACATCAAATAAATTGAGTT
ATATGATGAGATTTCTAGAAAGCAATGGGTATGGGTACTATGTATTTTGCTTATTTGTAT
GTCTGCAGTGCTAAATTTGTGTCTCTCTTTGTATTGTGATAGTCTTTTTTTTTAGTTGTC
AGTATGTTATTCGGGTATTAAAGAGTTTTAAATGTATGACAACAAGAAACTTTTCATACT
CTTGAATTAAAAGAGGACAGCGCGACAATATTTTATTTATTGTGGTGATATTTGGTTTGT
CCATTAAATTCCTATTATTCCCAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-804, gnl|bosTau2|chr14 (47293691-47292868)
               

               
               3-804, gnl|Hg17|chr6 (14087442-14088214)
               

               
               3-804, gnl|Mm7|chr13 (43110377-43111206)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-804, gnl|bosTau2|chr14 (47293691-47292868)
               

               
               3-804, gnl|Hg17|chr6 (14087442-14088214)
               

               
               3-804, gnl|Mm7|chr13 (43110377-43111206)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ret (0.128733)

	3-804, gnl\|bosTau2\|chr14 (47293691-47292868)
	3-804, gnl\|Hg17\|chr6 (14087442-14088214)
	3-804, gnl\|Mm7\|chr13 (43110377-43111206)