Non-Coding RNA Search

Ss1.1-Pig4-TMW8011I19.5

Sequence:


               
               CTGAATTACAGCTCTTGGGCCTCAGAATTTTCAATAGCCAGAATTCCTGGTTATCTGAGA
AGACTCTTTTATTAGATACTTTCCGTTGGTGACATTACATTCAACATATATATTTAAATG
AGAGTTTTGACTTCATCTCATTCTAGAAATTCATTCAAAGCTAAAGATTATATGTATATA
TTCATACACTCTTGTATGTGTATATACACACACACATATGCATGCAGTTTGTCAGGTTAT
ATGCAGAAATTCTATTAAATTTTTTTAAATGGACAAGCAATATGGGGTTGATGTATTTAT
CTGATTTGTTTAAAATTTTGTATATCACCAAATTTTTAAAGTAAGTCAAATACTGGGTCA
TCCAGTTGGCTACTATTACACCTTAAAAATTGAGTTTACACAATTACCTGTTTATATGGT
GCTCATTTGTTATCTTAAAGATAATATGTGACTGTAGTAGTGATATTGATTCTACCAGCA
CTCTGTTTCACTACTTTTTAGTCAAAACTGGGTTTGTTCGTAGTATTCATTAATGCGAAT
CATAAAATAATTTGTACTAGAAGGCCCAAATCACAGAATAAAAGATGAAGAGTGGATTAG
CTGACATTCCAAACTAATATACATTGTTTATGCTTTCTTTAAAATAACTGAAAGAACATA
AAATCTCAGAAGTAGTTTGCTGCTAATATATACATATATTGTATAAAAAGGTATATTTTG
GTTTTGTTAAAACCCTTGTTGACTTTTCTACAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAATTACAGCTCTTGGGCCTCAGAATTTTCAATAGCCAGAATTCCTGGTTATCTGAGA
AGACTCTTTTATTAGATACTTTCCGTTGGTGACATTACATTCAACATATATATTTAAATG
AGAGTTTTGACTTCATCTCATTCTAGAAATTCATTCAAAGCTAAAGATTATATGTATATA
TTCATACACTCTTGTATGTGTATATACACACACACATATGCATGCAGTTTGTCAGGTTAT
ATGCAGAAATTCTATTAAATTTTTTTAAATGGACAAGCAATATGGGGTTGATGTATTTAT
CTGATTTGTTTAAAATTTTGTATATCACCAAATTTTTAAAGTAAGTCAAATACTGGGTCA
TCCAGTTGGCTACTATTACACCTTAAAAATTGAGTTTACACAATTACCTGTTTATATGGT
GCTCATTTGTTATCTTAAAGATAATATGTGACTGTAGTAGTGATATTGATTCTACCAGCA
CTCTGTTTCACTACTTTTTAGTCAAAACTGGGTTTGTTCGTAGTATTCATTAATGCGAAT
CATAAAATAATTTGTACTAGAAGGCCCAAATCACAGAATAAAAGATGAAGAGTGGATTAG
CTGACATTCCAAACTAATATACATTGTTTATGCTTTCTTTAAAATAACTGAAAGAACATA
AAATCTCAGAAGTAGTTTGCTGCTAATATATACATATATTGTATAAAAAGGTATATTTTG
GTTTTGTTAAAACCCTTGTTGACTTTTCTACAGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-272, + strand, RNAz p=0.999915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-272, + strand, RNAz p=0.999915

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               118-212, CJ452404 macaque brain cDNA library QflA Macaca fascicularis cDNA 
(dbj|CJ452404.1|), blast E-value=4e-17, identity=88.54% 
               

               
               118-258, AJ816815 KN206 Bos sp. cDNA clone C0005209a13, mRNA sequence 
(emb|AJ816815.1|), blast E-value=2e-22, identity=85.92% 
               

               
               118-258, fs930.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA 
(gb|CF118768.1|), blast E-value=1e-17, identity=84.51% 
               

               
               118-258, CES007992 Bos taurus fat cDNA library Bos taurus cDNA clone 
(gb|CF613792.1|), blast E-value=2e-22, identity=85.92% 
               

               
               134-242, LIB3628-002-Q1-K1-D3 LIB3628 Canis familiaris cDNA clone 
(gb|DN362315.1|), blast E-value=3e-30, identity=91.82% 
               

               
               118-258, 000923BEMN016622HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY153458.1|), blast E-value=2e-22, identity=85.92%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               118-212, CJ452404 macaque brain cDNA library QflA Macaca fascicularis cDNA 
(dbj|CJ452404.1|), blast E-value=4e-17, identity=88.54% 
               

               
               118-258, AJ816815 KN206 Bos sp. cDNA clone C0005209a13, mRNA sequence 
(emb|AJ816815.1|), blast E-value=2e-22, identity=85.92% 
               

               
               118-258, fs930.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA 
(gb|CF118768.1|), blast E-value=1e-17, identity=84.51% 
               

               
               118-258, CES007992 Bos taurus fat cDNA library Bos taurus cDNA clone 
(gb|CF613792.1|), blast E-value=2e-22, identity=85.92% 
               

               
               134-242, LIB3628-002-Q1-K1-D3 LIB3628 Canis familiaris cDNA clone 
(gb|DN362315.1|), blast E-value=3e-30, identity=91.82% 
               

               
               118-258, 000923BEMN016622HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY153458.1|), blast E-value=2e-22, identity=85.92%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_198128, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_198128, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr24 (19683018-19682254)
               

               
               1-756, gnl|Hg17|chr18 (27963870-27964635)
               

               
               1-756, gnl|Mm7|chr18 (21397540-21398208)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr24 (19683018-19682254)
               

               
               1-756, gnl|Hg17|chr18 (27963870-27964635)
               

               
               1-756, gnl|Mm7|chr18 (21397540-21398208)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               liv (0.292569)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               ese (0.253004)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               nbm (0.0993246)

	118-212, CJ452404 macaque brain cDNA library QflA Macaca fascicularis cDNA (dbj\|CJ452404.1\|), blast E-value=4e-17, identity=88.54%
	118-258, AJ816815 KN206 Bos sp. cDNA clone C0005209a13, mRNA sequence (emb\|AJ816815.1\|), blast E-value=2e-22, identity=85.92%
	118-258, fs930.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA (gb\|CF118768.1\|), blast E-value=1e-17, identity=84.51%
	118-258, CES007992 Bos taurus fat cDNA library Bos taurus cDNA clone (gb\|CF613792.1\|), blast E-value=2e-22, identity=85.92%
	134-242, LIB3628-002-Q1-K1-D3 LIB3628 Canis familiaris cDNA clone (gb\|DN362315.1\|), blast E-value=3e-30, identity=91.82%
	118-258, 000923BEMN016622HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY153458.1\|), blast E-value=2e-22, identity=85.92%

	1-756, gnl\|bosTau2\|chr24 (19683018-19682254)
	1-756, gnl\|Hg17\|chr18 (27963870-27964635)
	1-756, gnl\|Mm7\|chr18 (21397540-21398208)

	liv (0.292569)
	ese (0.253004)
	ece (0.229305)
	fcc (0.197785)
	lin (0.145603)
	ret (0.128733)
	nbm (0.0993246)