Non-Coding RNA Search

Ss1.1-Pig4-TMW8011I24.3

Sequence:


               
               GGGAGGATGAAGCCGGCCGGAGAGAGGCTACACACGTGCTCGGCCATCAGGAGTACTCGT
CCTCACCGCTCTTCCAGGCGCCAAGGACTTCAGGCCGGGAGCCCTCCGCCCCTCCCGGGA
ACCTGCCGCCCCGGGGGCTGCCGGGCGCCGGGCTGGCCTACCCCGCCAGCTCCACGGAAG
ACCTTCAGCCCGGCCACTCCTCGGCCTCGCTCATCAAAGCGATCCGCGAGGAGCTCCTGC
GGCTCTCGCAGAAGCAGAGCGCCGTGCAGAACTTCCACAGCTGATCGGCCTCGCCTCCCG
CATTTGCCAAGTATCTGCTTCCTGTGGAAGCAAGACTGGAAGGAAAGCAGCCGGGCGGGT
GTTTGTCAGAGGACGAGCATCTCCTGGGGCCACGTGCCCGAGGAAGGCAGCAGGTTGCAA
TTTTAGAAGATGCCATAAGTCCCGTGACAGCTTGTCATGCTTTTTCTACGTTGGCAGTTT
TTGTGACCACTTGGGTAGCGTTGACGTTTCTGTACTTTAGGCCAAAAGCCAGCAGCACTT
CACGAAAGACAGAGCGCGATTCTGAGCTCATGAAGTGACTGTGAGTCTCGTTTTTAAAAG
GCAAAAGATGACCATGTGTAGCTGGTGTAGGGGTTAAAGGGATCGAGTGTTTCCGTGGGA
AGATGTGATTCAGACTGGTTTGTACGATGAACCTGCTGCTTTGTTTTCTGAGAAGAGAGA
TTTGAAGACATTTTCTTAACAGCTTGATTTCCCTCTTTTCCTCCATAGGAACTTATTTTA
ATAGTAATATTAACAACAAGAATACCACCACTGGGAATTTAAAAAGCTACTCGTGAGAAA
CCAAATGATAGATTGTAGAGCCTGACGATTCCAAATGAAGCCATCATCTGCGTTTTCCTT
CTATTTCTGGTGCTACAGCCCCAAGAGCCCCCTTAGCCTTGTCCGTGAAATGCAACTTTG
GCTTTCTCAATGGAAGAAAAGCTTGAAGGTTTCATTTTGTTCTAAAAGGAAAAAAAGAAA
AAAACAAAAAACAAACAAAAAAAACCAAACTCCCTGCATGGGAGAAAAAGCTTAATATTT
ATTTGGTTATTCAAAATACATATCAGAGTTTAGATTTACATTCTTAATTGTCTTTGCTGT
TTGTTCATTGGCTCATGCAACTACTGGTGGCCTCTCATTGGCGTGCGTCTCTCTCTCAAG
GCCAGTCCTGTAGAATGAAGCTTTCAGGGGGTCCCGAGTGAATCCTTGCACTTGGCTGAT
GAGTTGCTCCCCCATTATGTTTGAATGAGGAATCATACATGAGCAAAAATTATTTTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGATGAAGCCGGCCGGAGAGAGGCTACACACGTGCTCGGCCATCAGGAGTACTCGT
CCTCACCGCTCTTCCAGGCGCCAAGGACTTCAGGCCGGGAGCCCTCCGCCCCTCCCGGGA
ACCTGCCGCCCCGGGGGCTGCCGGGCGCCGGGCTGGCCTACCCCGCCAGCTCCACGGAAG
ACCTTCAGCCCGGCCACTCCTCGGCCTCGCTCATCAAAGCGATCCGCGAGGAGCTCCTGC
GGCTCTCGCAGAAGCAGAGCGCCGTGCAGAACTTCCACAGCTGATCGGCCTCGCCTCCCG
CATTTGCCAAGTATCTGCTTCCTGTGGAAGCAAGACTGGAAGGAAAGCAGCCGGGCGGGT
GTTTGTCAGAGGACGAGCATCTCCTGGGGCCACGTGCCCGAGGAAGGCAGCAGGTTGCAA
TTTTAGAAGATGCCATAAGTCCCGTGACAGCTTGTCATGCTTTTTCTACGTTGGCAGTTT
TTGTGACCACTTGGGTAGCGTTGACGTTTCTGTACTTTAGGCCAAAAGCCAGCAGCACTT
CACGAAAGACAGAGCGCGATTCTGAGCTCATGAAGTGACTGTGAGTCTCGTTTTTAAAAG
GCAAAAGATGACCATGTGTAGCTGGTGTAGGGGTTAAAGGGATCGAGTGTTTCCGTGGGA
AGATGTGATTCAGACTGGTTTGTACGATGAACCTGCTGCTTTGTTTTCTGAGAAGAGAGA
TTTGAAGACATTTTCTTAACAGCTTGATTTCCCTCTTTTCCTCCATAGGAACTTATTTTA
ATAGTAATATTAACAACAAGAATACCACCACTGGGAATTTAAAAAGCTACTCGTGAGAAA
CCAAATGATAGATTGTAGAGCCTGACGATTCCAAATGAAGCCATCATCTGCGTTTTCCTT
CTATTTCTGGTGCTACAGCCCCAAGAGCCCCCTTAGCCTTGTCCGTGAAATGCAACTTTG
GCTTTCTCAATGGAAGAAAAGCTTGAAGGTTTCATTTTGTTCTAAAAGGAAAAAAAGAAA
AAAACAAAAAACAAACAAAAAAAACCAAACTCCCTGCATGGGAGAAAAAGCTTAATATTT
ATTTGGTTATTCAAAATACATATCAGAGTTTAGATTTACATTCTTAATTGTCTTTGCTGT
TTGTTCATTGGCTCATGCAACTACTGGTGGCCTCTCATTGGCGTGCGTCTCTCTCTCAAG
GCCAGTCCTGTAGAATGAAGCTTTCAGGGGGTCCCGAGTGAATCCTTGCACTTGGCTGAT
GAGTTGCTCCCCCATTATGTTTGAATGAGGAATCATACATGAGCAAAAATTATTTTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822011|ref|XP_582029.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822011|ref|XP_582029.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               309-424, - strand, RNAz p=0.822014

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-424, - strand, RNAz p=0.822014

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               30-1010, gnl|bosTau2|chr4 (60099127-60100112)
               

               
               30-1010, gnl|Hg17|chr7 (137980160-137979187)
               

               
               30-1010, gnl|Mm7|chr6 (38059501-38058463)
               


               
               1063-1315, gnl|bosTau2|chr4 (60100136-60100383)
               

               
               1063-1315, gnl|Hg17|chr7 (137979168-137978912)
               

               
               1063-1315, gnl|Mm7|chr6 (38058439-38058198)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-1010, gnl|bosTau2|chr4 (60099127-60100112)
               

               
               30-1010, gnl|Hg17|chr7 (137980160-137979187)
               

               
               30-1010, gnl|Mm7|chr6 (38059501-38058463)
               


               
               1063-1315, gnl|bosTau2|chr4 (60100136-60100383)
               

               
               1063-1315, gnl|Hg17|chr7 (137979168-137978912)
               

               
               1063-1315, gnl|Mm7|chr6 (38058439-38058198)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	30-1010, gnl\|bosTau2\|chr4 (60099127-60100112)
	30-1010, gnl\|Hg17\|chr7 (137980160-137979187)
	30-1010, gnl\|Mm7\|chr6 (38059501-38058463)

	1063-1315, gnl\|bosTau2\|chr4 (60100136-60100383)
	1063-1315, gnl\|Hg17\|chr7 (137979168-137978912)
	1063-1315, gnl\|Mm7\|chr6 (38058439-38058198)

	ece (0.229305)
	csk (0.140746)
	ova (0.129132)
	pgl (0.118483)
	ecc (0.115035)