Non-Coding RNA Search

Ss1.1-Pig4-TMW8011J02.3

Sequence:


               
               CAGTGTTTGGGCTTTATTGCAAAGTTGGGCTGTGCGCTGTAGACAATACACTGGACACCA
GACAGGGCCTTGGCCGAGGGAGGGACCGGGCTCGAGGTGAGCGGGAGCGTGTCCTAGGCT
AAAGGGGCAGGGAGTCTCAAGAGGAGGGCCTTAGCCAAAGGTGTGGGTGGGTCGCGAACC
TGGACCAAAATTCTAGAGCTCTAGGGGACTGAGGCCAATCCACAAGGGGCCCGAACTCCG
GGAGGAGGGGAGGGGTAAATCTAAAACAAAGAGGTGTAACGTGTAACCTGAGGGGCGGAT
CCTAAGCCAGGGGTGGGGTGGGCGGGCGGGGCTAGGGTCTGCCTCAGTGGAAGGTCTCCA
CCTCCACTACGGTCCAGTCACCCTGTGGGGAAGCCACATCGTCTGGGGAGAAGCTAGTGA
CCGAGGTGATGCTGGCGCGGGACTCGTCCAGGGGAGACAATAGTTCAGCCCAGCGACCTA
GTTCGGCCTCACTGAGGGCACTACGGGCACCCCCCGCGCTGCCGCCACCCCCTGCGCCCC
CTGGGCCACCGCTGCTGCCACCCGGGGCACCCTCGGCTGCAGCTAGAAGCAGCGTCCGGC
TCAGCAGGTGCTGAACCACACTCGCCTGCAGCGCCCCCAGCGGCAGTTCGCCCAGGCGCG
CCGGCTTCGCGCCCCGTGAAGCCGCTCCGGCCCCAGCCGCAGTCGCCGCCTTTGCACCGC
CTGCGCCAGGCCCAGGTCCGGGATCCAGTGCATCTGTGGCGGAGGTCGCCGACTCTGGTC
CTTCAGCCTCGTAGATGGTGCACAAGCCGTCAGCAGAGCCCGACCCGGCCGCAGGAGACC
AAGGCAGGGGCGCTCCTGGGGGGCCGCGGATGGCCAGCGGCGGAGCGGAACCCCGGCTCC
AAGCAGCCGGGTGGCAGGCGGCGAGTTCTGCATCGGCAGGCGGGGAGGATGCAGCGCCGC
CCTCCGGCCCACTGTCGTAGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGTTTGGGCTTTATTGCAAAGTTGGGCTGTGCGCTGTAGACAATACACTGGACACCA
GACAGGGCCTTGGCCGAGGGAGGGACCGGGCTCGAGGTGAGCGGGAGCGTGTCCTAGGCT
AAAGGGGCAGGGAGTCTCAAGAGGAGGGCCTTAGCCAAAGGTGTGGGTGGGTCGCGAACC
TGGACCAAAATTCTAGAGCTCTAGGGGACTGAGGCCAATCCACAAGGGGCCCGAACTCCG
GGAGGAGGGGAGGGGTAAATCTAAAACAAAGAGGTGTAACGTGTAACCTGAGGGGCGGAT
CCTAAGCCAGGGGTGGGGTGGGCGGGCGGGGCTAGGGTCTGCCTCAGTGGAAGGTCTCCA
CCTCCACTACGGTCCAGTCACCCTGTGGGGAAGCCACATCGTCTGGGGAGAAGCTAGTGA
CCGAGGTGATGCTGGCGCGGGACTCGTCCAGGGGAGACAATAGTTCAGCCCAGCGACCTA
GTTCGGCCTCACTGAGGGCACTACGGGCACCCCCCGCGCTGCCGCCACCCCCTGCGCCCC
CTGGGCCACCGCTGCTGCCACCCGGGGCACCCTCGGCTGCAGCTAGAAGCAGCGTCCGGC
TCAGCAGGTGCTGAACCACACTCGCCTGCAGCGCCCCCAGCGGCAGTTCGCCCAGGCGCG
CCGGCTTCGCGCCCCGTGAAGCCGCTCCGGCCCCAGCCGCAGTCGCCGCCTTTGCACCGC
CTGCGCCAGGCCCAGGTCCGGGATCCAGTGCATCTGTGGCGGAGGTCGCCGACTCTGGTC
CTTCAGCCTCGTAGATGGTGCACAAGCCGTCAGCAGAGCCCGACCCGGCCGCAGGAGACC
AAGGCAGGGGCGCTCCTGGGGGGCCGCGGATGGCCAGCGGCGGAGCGGAACCCCGGCTCC
AAGCAGCCGGGTGGCAGGCGGCGAGTTCTGCATCGGCAGGCGGGGAGGATGCAGCGCCGC
CCTCCGGCCCACTGTCGTAGCCGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8CEU8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CEU8_MOUSE

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-175, gnl|bosTau2|chr18 (16634518-16634359)
               

               
               11-175, gnl|Hg17|chr19 (7839624-7839760)
               


               
               855-984, gnl|bosTau2|chr7 (12547176-12547305)
               

               
               855-984, gnl|Hg17|chr19 (7840600-7840729)
               

               
               855-984, gnl|Mm7|chr8 (4177154-4177283)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-175, gnl|bosTau2|chr18 (16634518-16634359)
               

               
               11-175, gnl|Hg17|chr19 (7839624-7839760)
               


               
               855-984, gnl|bosTau2|chr7 (12547176-12547305)
               

               
               855-984, gnl|Hg17|chr19 (7840600-7840729)
               

               
               855-984, gnl|Mm7|chr8 (4177154-4177283)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               eye (0.170503)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               eye (0.170503)

	11-175, gnl\|bosTau2\|chr18 (16634518-16634359)
	11-175, gnl\|Hg17\|chr19 (7839624-7839760)

	855-984, gnl\|bosTau2\|chr7 (12547176-12547305)
	855-984, gnl\|Hg17\|chr19 (7840600-7840729)
	855-984, gnl\|Mm7\|chr8 (4177154-4177283)