Ss1.1-Pig4-TMW8011J03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCTGCCTGAGGCCTCGGTGATCTCTTTGCACCCTCCAGATGCAGAGTATGATGAAGAT GATGGTCAGTTCAGTGATGACTCAGGGGCTGACCAAGAAAAGGAGAAGGTGAAGCTGAAA GGTTACAATCCAGCCGAAGTTGGAGCTGCAGGCCAGGGCTACCTCTGGAAAGCTGCAGAC ATGAACATGGAAGAAGAGGAGGAACTACAGCAGACCCTTTGGGGACTTAAAATCAATGTG GAAGAAGAGAGTGAAACTGAAAGTGAGCGAAGTATGGATTCTGAGGAGCTAGACAGCCGG ACAGGCTCCCCACAGATGGATGATGTCAAAGTATTCCAGAATGAAGTCTTAGGAACACTA CAACGGGGCAAGGAGGAGAACATTTCTTGTGACAATCTAGTCCTAGAGATCAACTCTCTC AAGTACGCCTACAATATAAGCCTAAAGGAAGTGATGCAGGTACTGAGCCACGTGGTCCTG GAATTCCCTTTGCAACAGATGGATTCCCCGCTTGACGCAAACCGCTACTGTGCCCTGCTG ATTCCCCTGCTCAAGGCCTGGAGCCCTGTTTTTAGGAACTACATAAAGCGTGCAGCTGAT CATTTGGAGGCATTGGCAGCCATTGAGGACTTCTTCCTGGAGCATGAAGTTCTTAGTACT TCCATGGCCAAGGTATTGATGGCTTTCTACCAGCTGGAGATCCTGGCTGAGGAAACAATC CTGAGCTGGTTCAGCCAAAGGGATATAACTGACAAGGGCCGGCAGTTGCGCAAGAACCTG CAGCTGCAGAGGTTCATCCAGTGGCTAAAAGAGGCAGAAGAGGAGTCATCTGAAGATGAC TGAAGTCGAACTGCCTGCTCCTGTGGGTGTGGTTGATTGTCCTCCTGGTTTCTGGGCCAG GGCAAGTAAGAGGCTAGTTGCAGAAAGTTGAGTGACCACCGTCTGAGCTGAGACTTACAG GAGCAGAGGCTGGAACTACAGTATTCTTCCCACCGCCAGCAACTATGTGCCTCCCATCCT TACTGGGGAGTTGGGATGAGGGAAGTTGGGCTGGATAACAGCTCTGCCTAAGGAGGAACT AGGCAGGCCCTGCAGTTAGAGGAAGGCTGGAGGAAAAGCTTTGTGCTCTGGTTTCCCCTC AGGAAATAGCAGAGAGCAGTTGGCCCTCTCTGCTGCTTGTATTTGTTAATATTAAAAAAC AGAGAGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCTGCCTGAGGCCTCGGTGATCTCTTTGCACCCTCCAGATGCAGAGTATGATGAAGAT GATGGTCAGTTCAGTGATGACTCAGGGGCTGACCAAGAAAAGGAGAAGGTGAAGCTGAAA GGTTACAATCCAGCCGAAGTTGGAGCTGCAGGCCAGGGCTACCTCTGGAAAGCTGCAGAC ATGAACATGGAAGAAGAGGAGGAACTACAGCAGACCCTTTGGGGACTTAAAATCAATGTG GAAGAAGAGAGTGAAACTGAAAGTGAGCGAAGTATGGATTCTGAGGAGCTAGACAGCCGG ACAGGCTCCCCACAGATGGATGATGTCAAAGTATTCCAGAATGAAGTCTTAGGAACACTA CAACGGGGCAAGGAGGAGAACATTTCTTGTGACAATCTAGTCCTAGAGATCAACTCTCTC AAGTACGCCTACAATATAAGCCTAAAGGAAGTGATGCAGGTACTGAGCCACGTGGTCCTG GAATTCCCTTTGCAACAGATGGATTCCCCGCTTGACGCAAACCGCTACTGTGCCCTGCTG ATTCCCCTGCTCAAGGCCTGGAGCCCTGTTTTTAGGAACTACATAAAGCGTGCAGCTGAT CATTTGGAGGCATTGGCAGCCATTGAGGACTTCTTCCTGGAGCATGAAGTTCTTAGTACT TCCATGGCCAAGGTATTGATGGCTTTCTACCAGCTGGAGATCCTGGCTGAGGAAACAATC CTGAGCTGGTTCAGCCAAAGGGATATAACTGACAAGGGCCGGCAGTTGCGCAAGAACCTG CAGCTGCAGAGGTTCATCCAGTGGCTAAAAGAGGCAGAAGAGGAGTCATCTGAAGATGAC TGAAGTCGAACTGCCTGCTCCTGTGGGTGTGGTTGATTGTCCTCCTGGTTTCTGGGCCAG GGCAAGTAAGAGGCTAGTTGCAGAAAGTTGAGTGACCACCGTCTGAGCTGAGACTTACAG GAGCAGAGGCTGGAACTACAGTATTCTTCCCACCGCCAGCAACTATGTGCCTCCCATCCT TACTGGGGAGTTGGGATGAGGGAAGTTGGGCTGGATAACAGCTCTGCCTAAGGAGGAACT AGGCAGGCCCTGCAGTTAGAGGAAGGCTGGAGGAAAAGCTTTGTGCTCTGGTTTCCCCTC AGGAAATAGCAGAGAGCAGTTGGCCCTCTCTGCTGCTTGTATTTGTTAATATTAAAAAAC AGAGAGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 4-1221, - strand, RNAz p=0.999983 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 4-1221, - strand, RNAz p=0.999983 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 4-123, gnl|bosTau2|chr1 (51299461-51299342) | |
| 4-123, gnl|Hg17|chr3 (185342751-185342870) | |
| 4-123, gnl|Mm7|chr16 (20055244-20055363) | |
| 223-331, gnl|bosTau2|chr1 (51298799-51298691) | |
| 223-331, gnl|Hg17|chr3 (185343268-185343376) | |
| 223-331, gnl|Mm7|chr16 (20056148-20056256) | |
| 548-674, gnl|bosTau2|chr1 (51297500-51297374) | |
| 548-674, gnl|canFam2|chr34 (20053226-20053386) | |
| 548-674, gnl|dasNov1|scaffold_38166 (10040-10200) | |
| 548-674, gnl|echTel1|scaffold_313231 (6372-6531) | |
| 548-674, gnl|galGal2|chr9 (15134594-15134764) | |
| 548-674, gnl|hg17|chr3 (185344577-185344737) | |
| 548-674, gnl|Hg17|chr3 (185344590-185344716) | |
| 548-674, gnl|loxAfr1|scaffold_6504 (17295-17455) | |
| 548-674, gnl|mm7|chr16 (20058037-20058197) | |
| 548-674, gnl|Mm7|chr16 (20058050-20058176) | |
| 548-674, gnl|monDom2|scaffold_167 (1442876-1443036) | |
| 548-674, gnl|oryCun1|scaffold_141027 (13009-12849) | |
| 548-674, gnl|panTro1|chr2 (189295341-189295501) | |
| 548-674, gnl|rheMac2|chr2 (102526258-102526098) | |
| 548-674, gnl|rn3|chr11 (82693537-82693377) | |
| 548-674, gnl|tetNig1|chr15 (2223577-2223717) | |
| 548-674, gnl|xenTro1|scaffold_1143 (35408-35266) | |
| 1001-1221, gnl|bosTau2|chr1 (68529037-68529260) | |
| 1001-1221, gnl|Mm7|chr16 (20059189-20059372) | |
| 1022-1218, gnl|bosTau2|chr15 (5952445-5952251) | |
| 1022-1218, gnl|Hg17|chr3 (185345612-185345789) | |
| 1022-1218, gnl|Mm7|chr16 (20059213-20059377) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-123, gnl|bosTau2|chr1 (51299461-51299342) | |
| 4-123, gnl|Hg17|chr3 (185342751-185342870) | |
| 4-123, gnl|Mm7|chr16 (20055244-20055363) | |
| 223-331, gnl|bosTau2|chr1 (51298799-51298691) | |
| 223-331, gnl|Hg17|chr3 (185343268-185343376) | |
| 223-331, gnl|Mm7|chr16 (20056148-20056256) | |
| 548-674, gnl|bosTau2|chr1 (51297500-51297374) | |
| 548-674, gnl|canFam2|chr34 (20053226-20053386) | |
| 548-674, gnl|dasNov1|scaffold_38166 (10040-10200) | |
| 548-674, gnl|echTel1|scaffold_313231 (6372-6531) | |
| 548-674, gnl|galGal2|chr9 (15134594-15134764) | |
| 548-674, gnl|hg17|chr3 (185344577-185344737) | |
| 548-674, gnl|Hg17|chr3 (185344590-185344716) | |
| 548-674, gnl|loxAfr1|scaffold_6504 (17295-17455) | |
| 548-674, gnl|mm7|chr16 (20058037-20058197) | |
| 548-674, gnl|Mm7|chr16 (20058050-20058176) | |
| 548-674, gnl|monDom2|scaffold_167 (1442876-1443036) | |
| 548-674, gnl|oryCun1|scaffold_141027 (13009-12849) | |
| 548-674, gnl|panTro1|chr2 (189295341-189295501) | |
| 548-674, gnl|rheMac2|chr2 (102526258-102526098) | |
| 548-674, gnl|rn3|chr11 (82693537-82693377) | |
| 548-674, gnl|tetNig1|chr15 (2223577-2223717) | |
| 548-674, gnl|xenTro1|scaffold_1143 (35408-35266) | |
| 1001-1221, gnl|bosTau2|chr1 (68529037-68529260) | |
| 1001-1221, gnl|Mm7|chr16 (20059189-20059372) | |
| 1022-1218, gnl|bosTau2|chr15 (5952445-5952251) | |
| 1022-1218, gnl|Hg17|chr3 (185345612-185345789) | |
| 1022-1218, gnl|Mm7|chr16 (20059213-20059377) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| hlv (0.278513) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| fbs (0.175346) | |
| csp (0.161186) | |
| pty (0.142714) | |
| cov (0.132153) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.278513) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| fbs (0.175346) | |
| csp (0.161186) | |
| pty (0.142714) | |
| cov (0.132153) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |