Non-Coding RNA Search

Ss1.1-Pig4-TMW8011J18.5

Sequence:


               
               TGCTTAGGCATTTTGATCATATCACTAAGGACTACCATGACCACATAGCTGAAATATCAG
CTAAGCTTGTAGCGATAATGGATAGCTTATTTGACAAGCTGTTATCTAAGTATGAGGTGA
AAGCTCCTGTTCCTTCTGCCTGTTTCAGGAATATTTGTAAGCAAATGACAAAAATGCATG
AAGCTATATTTGATCTCCTTCCAGAAGAACAAACACAAATGTTATTTTTAAGAATTAATG
CAAGTTACAAACTCCACTTGAAAAAGCAGTTGTCTCATTTAAATGTGATAAATGATGGAG
GACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTACACTGGAAATCTTCAAGCCT
TAAAAGGCCTTAAAGATTTGGACCTAAACATGGCCGAGATCTGGGAACAGAAAAGGTGAT
GACATACTGGAAAACTGGGTAGTTCATCTGACCACAGGATGTATGTTTATGATGAAATAT
GGATGCCTGTGACGCAAGAACTGAACCTGGAACCCAAAGCGAACTGGGGTTGGGGAAGGG
GAAAAGGAAAGTATCAGTGTTGGGAAACTGGGATTCAGTGGGATCTACAAGGAATGCCAT
TTGTGTGCTTCCTTCAAAGAGGAGTAACTGATCAGGTATCTATAACATTTTTCATTCTCT
ATGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAG
CTGTAGTTGACTAGAATGCTCTGTATACTTTATATTAAAAAATGCTTTGCATTTCTTCCA
GTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTACAATTTAAAATATTA
AAATCTTAGTCAACTTCTGTAGAAAGTTTTCTCTATGAAAGTAAAGCTGTTTGAAAATTA
TTTTTTTACAGATCTTTCTATAAAAAATAAACATCTTTTGATTGCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTAGGCATTTTGATCATATCACTAAGGACTACCATGACCACATAGCTGAAATATCAG
CTAAGCTTGTAGCGATAATGGATAGCTTATTTGACAAGCTGTTATCTAAGTATGAGGTGA
AAGCTCCTGTTCCTTCTGCCTGTTTCAGGAATATTTGTAAGCAAATGACAAAAATGCATG
AAGCTATATTTGATCTCCTTCCAGAAGAACAAACACAAATGTTATTTTTAAGAATTAATG
CAAGTTACAAACTCCACTTGAAAAAGCAGTTGTCTCATTTAAATGTGATAAATGATGGAG
GACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTACACTGGAAATCTTCAAGCCT
TAAAAGGCCTTAAAGATTTGGACCTAAACATGGCCGAGATCTGGGAACAGAAAAGGTGAT
GACATACTGGAAAACTGGGTAGTTCATCTGACCACAGGATGTATGTTTATGATGAAATAT
GGATGCCTGTGACGCAAGAACTGAACCTGGAACCCAAAGCGAACTGGGGTTGGGGAAGGG
GAAAAGGAAAGTATCAGTGTTGGGAAACTGGGATTCAGTGGGATCTACAAGGAATGCCAT
TTGTGTGCTTCCTTCAAAGAGGAGTAACTGATCAGGTATCTATAACATTTTTCATTCTCT
ATGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAACACAG
CTGTAGTTGACTAGAATGCTCTGTATACTTTATATTAAAAAATGCTTTGCATTTCTTCCA
GTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTACAATTTAAAATATTA
AAATCTTAGTCAACTTCTGTAGAAAGTTTTCTCTATGAAAGTAAAGCTGTTTGAAAATTA
TTTTTTTACAGATCTTTCTATAAAAAATAAACATCTTTTGATTGCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11359984|pir||T46308

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11359984|pir||T46308

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               313-431, - strand, RNAz p=0.848392
               

               
               588-787, + strand, RNAz p=0.964529

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-431, - strand, RNAz p=0.848392
               

               
               588-787, + strand, RNAz p=0.964529

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC030275, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC030275, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               109-221, gnl|bosTau2|chr11 (43392667-43392779)
               

               
               109-221, gnl|canFam2|chr10 (66756313-66756424)
               

               
               109-221, gnl|danRer3|chr1 (55080830-55080924)
               

               
               109-221, gnl|dasNov1|scaffold_202212 (4178-4265)
               

               
               109-221, gnl|echTel1|scaffold_314354 (336474-336363)
               

               
               109-221, gnl|fr1|chrUn (218617143-218617038)
               

               
               109-221, gnl|galGal2|chr3 (7613975-7613864)
               

               
               109-221, gnl|hg17|chr2 (64038241-64038352)
               

               
               109-221, gnl|Hg17|chr2 (64038368-64038256)
               

               
               109-221, gnl|mm7|chr11 (21267055-21266944)
               

               
               109-221, gnl|Mm7|chr11 (21266926-21267038)
               

               
               109-221, gnl|monDom2|scaffold_1 (29159507-29159618)
               

               
               109-221, gnl|oryCun1|scaffold_93689 (1133-1244)
               

               
               109-221, gnl|panTro1|chr12 (66263485-66263600)
               

               
               109-221, gnl|rheMac2|chr13 (64096868-64096979)
               

               
               109-221, gnl|rn3|chr14 (102085318-102085207)
               

               
               109-221, gnl|tetNig1|chrUn_random (84172441-84172348)
               

               
               109-221, gnl|xenTro1|scaffold_321 (882973-882861)
               


               
               313-948, gnl|bosTau2|chr11 (43401545-43402182)
               

               
               313-948, gnl|Hg17|chr2 (64032321-64031688)
               

               
               313-948, gnl|Mm7|chr11 (21271761-21272387)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-221, gnl|bosTau2|chr11 (43392667-43392779)
               

               
               109-221, gnl|canFam2|chr10 (66756313-66756424)
               

               
               109-221, gnl|danRer3|chr1 (55080830-55080924)
               

               
               109-221, gnl|dasNov1|scaffold_202212 (4178-4265)
               

               
               109-221, gnl|echTel1|scaffold_314354 (336474-336363)
               

               
               109-221, gnl|fr1|chrUn (218617143-218617038)
               

               
               109-221, gnl|galGal2|chr3 (7613975-7613864)
               

               
               109-221, gnl|hg17|chr2 (64038241-64038352)
               

               
               109-221, gnl|Hg17|chr2 (64038368-64038256)
               

               
               109-221, gnl|mm7|chr11 (21267055-21266944)
               

               
               109-221, gnl|Mm7|chr11 (21266926-21267038)
               

               
               109-221, gnl|monDom2|scaffold_1 (29159507-29159618)
               

               
               109-221, gnl|oryCun1|scaffold_93689 (1133-1244)
               

               
               109-221, gnl|panTro1|chr12 (66263485-66263600)
               

               
               109-221, gnl|rheMac2|chr13 (64096868-64096979)
               

               
               109-221, gnl|rn3|chr14 (102085318-102085207)
               

               
               109-221, gnl|tetNig1|chrUn_random (84172441-84172348)
               

               
               109-221, gnl|xenTro1|scaffold_321 (882973-882861)
               


               
               313-948, gnl|bosTau2|chr11 (43401545-43402182)
               

               
               313-948, gnl|Hg17|chr2 (64032321-64031688)
               

               
               313-948, gnl|Mm7|chr11 (21271761-21272387)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               rec (0.346141)
               

               
               lin (0.291206)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               lin (0.291206)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	313-431, - strand, RNAz p=0.848392
	588-787, + strand, RNAz p=0.964529

	109-221, gnl\|bosTau2\|chr11 (43392667-43392779)
	109-221, gnl\|canFam2\|chr10 (66756313-66756424)
	109-221, gnl\|danRer3\|chr1 (55080830-55080924)
	109-221, gnl\|dasNov1\|scaffold_202212 (4178-4265)
	109-221, gnl\|echTel1\|scaffold_314354 (336474-336363)
	109-221, gnl\|fr1\|chrUn (218617143-218617038)
	109-221, gnl\|galGal2\|chr3 (7613975-7613864)
	109-221, gnl\|hg17\|chr2 (64038241-64038352)
	109-221, gnl\|Hg17\|chr2 (64038368-64038256)
	109-221, gnl\|mm7\|chr11 (21267055-21266944)
	109-221, gnl\|Mm7\|chr11 (21266926-21267038)
	109-221, gnl\|monDom2\|scaffold_1 (29159507-29159618)
	109-221, gnl\|oryCun1\|scaffold_93689 (1133-1244)
	109-221, gnl\|panTro1\|chr12 (66263485-66263600)
	109-221, gnl\|rheMac2\|chr13 (64096868-64096979)
	109-221, gnl\|rn3\|chr14 (102085318-102085207)
	109-221, gnl\|tetNig1\|chrUn_random (84172441-84172348)
	109-221, gnl\|xenTro1\|scaffold_321 (882973-882861)

	313-948, gnl\|bosTau2\|chr11 (43401545-43402182)
	313-948, gnl\|Hg17\|chr2 (64032321-64031688)
	313-948, gnl\|Mm7\|chr11 (21271761-21272387)

	rec (0.346141)
	lin (0.291206)
	gul (0.177588)
	sin (0.174948)
	liv (0.146284)
	ret (0.128733)
	sug (0.127291)