Ss1.1-Pig4-TMW8011L09.3
|
GGCAGGCGGGTCCCCTGGGCGGTCCACCTGCGCGTCGCGGGGCCGCGCCCTGGGGGTCGA
TGGCGATGAACTATAACGCGAAGGACGAGGTGGACGGCGGGCCCCCGTGTGCCGCGGGGG
GCACCGCTAAGAACCGGAGGCCGGATAACACGGCCTTCAAGCAGCAACGGCTGCCAGCCT
GGCAGCCCATCCTTACGGCCGGCACGGTGCTGCCCACCTTTTTCATCATTGGCCTCATCT
TCATCCCTATCGGCATCGGGATCTTTGTCACCTCCAACAACATCCGCGAGATCGAGATTG
ATTACACCGGAACAGAGCCTTCCAGCCCTTGCAATAAATGTTTGTCTCCAAATGTGACAT
CTTGCATTTGTACCATTAACTTCACATTGGAACAATCATTCGAGGGCAATGTGTTTATGT
ACTATGGACTGTCTAATTTCTATCAAAACCATCGTCGTTATGTGAAATCTCGAGATGATA
GTCAACTAAATGGAGATCATGGTGCTTTACTTAATCCCAGTAAGGAATGTGAACCTTATC
GAAGAAGTGAAGACAAACCAATTGCTCCTTGTGGAGCCATTGCCAACAGTATGTTTAATG
ATACTCTAGAATTGTATCTGATTGGCAATGAATCTGAGTCCACACCTATTCCTTTGAAAA
AGAAAGGCATTGCTTGGTGGACAGACAAAAATGTGAAATTCAGAAATCCCTCTGGAGACA
TTCCACTAGAAGAACGATTCAAAGACACAGCAAAGCCAGTAAACTGGGTTAAACCAGTGT
ACCTGCTGGATTCTGACCAAGATAATAACGGGTTCATAAATGAGGATTTTATTGTTTGGA
TGCGCACTGCAGCGTTACCTACTTTTCGTAAGTTGTATCGTCTAATAGAGCGGAAAAGCG
ATTTACATCCAACGTTACCAGCTGGACGATACTATCTGAATATCACATACAATTATCCTG
TGCATTCATTTGATGGACGAAAACGGATGATCTTGAGCACTATTTCATGGATGGGAGGAA
AAAATCCATTTTTGGGGATTGCTTACATCGCTATTGGATCCATCTCCTTCCTTCTGGGAG
TTGTACTGCTAGTAATTAATCATAAATATAGAAACAGTAGTAATACTGCTGACATTACCA
TTTAATTTTATATTCTGAAAACAAATTTACTGCATGTGCATCAAGGCCAGTCCTATTCAA
CCTTGCTTTCAAATGCTGATGTCTGGTTAGTATGTCATTTTTGAAGTTGGCACATAACTT
TTTTTTAAAGCAATCTTTGTCCTTTGCTTCTTCCTTATGGATGACTTATGAAAATATATG
ACGGGTATAAGAGAAATTAACTATAGTGATCATATCAACACTGTAACTGCTGAAATGGCA
TTCTGATGTTTGCATTCTGTTGGGACAGGCCGTATGATGCATAGAGCCTCTTTGAAGTGA
AACGCGTCTGCTGCTTAAATGTTTATACTGTGTCGATAATATTATATTGACATGTGATAC
TGTATATGTGTGCCTATTGTGTGAAGAGCGGAATTACAATATGTATGAGAATAATGACTT
GCTAACTTTCAGGATTCAAGAGTTACAAAAAGATGAAGAAAGACCAAATCTAAATAAAAC
ACTTCATCATTTAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGCAGGCGGGTCCCCTGGGCGGTCCACCTGCGCGTCGCGGGGCCGCGCCCTGGGGGTCGA
TGGCGATGAACTATAACGCGAAGGACGAGGTGGACGGCGGGCCCCCGTGTGCCGCGGGGG
GCACCGCTAAGAACCGGAGGCCGGATAACACGGCCTTCAAGCAGCAACGGCTGCCAGCCT
GGCAGCCCATCCTTACGGCCGGCACGGTGCTGCCCACCTTTTTCATCATTGGCCTCATCT
TCATCCCTATCGGCATCGGGATCTTTGTCACCTCCAACAACATCCGCGAGATCGAGATTG
ATTACACCGGAACAGAGCCTTCCAGCCCTTGCAATAAATGTTTGTCTCCAAATGTGACAT
CTTGCATTTGTACCATTAACTTCACATTGGAACAATCATTCGAGGGCAATGTGTTTATGT
ACTATGGACTGTCTAATTTCTATCAAAACCATCGTCGTTATGTGAAATCTCGAGATGATA
GTCAACTAAATGGAGATCATGGTGCTTTACTTAATCCCAGTAAGGAATGTGAACCTTATC
GAAGAAGTGAAGACAAACCAATTGCTCCTTGTGGAGCCATTGCCAACAGTATGTTTAATG
ATACTCTAGAATTGTATCTGATTGGCAATGAATCTGAGTCCACACCTATTCCTTTGAAAA
AGAAAGGCATTGCTTGGTGGACAGACAAAAATGTGAAATTCAGAAATCCCTCTGGAGACA
TTCCACTAGAAGAACGATTCAAAGACACAGCAAAGCCAGTAAACTGGGTTAAACCAGTGT
ACCTGCTGGATTCTGACCAAGATAATAACGGGTTCATAAATGAGGATTTTATTGTTTGGA
TGCGCACTGCAGCGTTACCTACTTTTCGTAAGTTGTATCGTCTAATAGAGCGGAAAAGCG
ATTTACATCCAACGTTACCAGCTGGACGATACTATCTGAATATCACATACAATTATCCTG
TGCATTCATTTGATGGACGAAAACGGATGATCTTGAGCACTATTTCATGGATGGGAGGAA
AAAATCCATTTTTGGGGATTGCTTACATCGCTATTGGATCCATCTCCTTCCTTCTGGGAG
TTGTACTGCTAGTAATTAATCATAAATATAGAAACAGTAGTAATACTGCTGACATTACCA
TTTAATTTTATATTCTGAAAACAAATTTACTGCATGTGCATCAAGGCCAGTCCTATTCAA
CCTTGCTTTCAAATGCTGATGTCTGGTTAGTATGTCATTTTTGAAGTTGGCACATAACTT
TTTTTTAAAGCAATCTTTGTCCTTTGCTTCTTCCTTATGGATGACTTATGAAAATATATG
ACGGGTATAAGAGAAATTAACTATAGTGATCATATCAACACTGTAACTGCTGAAATGGCA
TTCTGATGTTTGCATTCTGTTGGGACAGGCCGTATGATGCATAGAGCCTCTTTGAAGTGA
AACGCGTCTGCTGCTTAAATGTTTATACTGTGTCGATAATATTATATTGACATGTGATAC
TGTATATGTGTGCCTATTGTGTGAAGAGCGGAATTACAATATGTATGAGAATAATGACTT
GCTAACTTTCAGGATTCAAGAGTTACAAAAAGATGAAGAAAGACCAAATCTAAATAAAAC
ACTTCATCATTTAAAAAAAAAAAA
|
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gi|56203514|emb|CAI19900.1| |
Protein identifier
|
gi|56203514|emb|CAI19900.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-296, gnl|bosTau2|chr9 (7391454-7391748) |
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2-296, gnl|Hg17|chr6 (76051132-76050838) |
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2-296, gnl|Mm7|chr9 (79869655-79869358) |
| |
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400-512, gnl|bosTau2|chr9 (7939128-7939016) |
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400-512, gnl|Hg17|chr6 (76031779-76031667) |
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400-512, gnl|Mm7|chr9 (79853727-79853608) |
| |
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600-744, gnl|bosTau2|chr9 (7931005-7930861) |
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600-744, gnl|Hg17|chr6 (76025927-76025783) |
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600-744, gnl|Mm7|chr9 (79851636-79851486) |
| |
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952-1632, gnl|bosTau2|chr9 (7927179-7926501) |
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952-1632, gnl|Hg17|chr6 (76022731-76022056) |
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952-1632, gnl|Mm7|chr9 (79847863-79847183) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-296, gnl|bosTau2|chr9 (7391454-7391748) |
|
2-296, gnl|Hg17|chr6 (76051132-76050838) |
|
2-296, gnl|Mm7|chr9 (79869655-79869358) |
| |
|
400-512, gnl|bosTau2|chr9 (7939128-7939016) |
|
400-512, gnl|Hg17|chr6 (76031779-76031667) |
|
400-512, gnl|Mm7|chr9 (79853727-79853608) |
| |
|
600-744, gnl|bosTau2|chr9 (7931005-7930861) |
|
600-744, gnl|Hg17|chr6 (76025927-76025783) |
|
600-744, gnl|Mm7|chr9 (79851636-79851486) |
| |
|
952-1632, gnl|bosTau2|chr9 (7927179-7926501) |
|
952-1632, gnl|Hg17|chr6 (76022731-76022056) |
|
952-1632, gnl|Mm7|chr9 (79847863-79847183) |
|
sug (0.763747) |
|
pro (0.512033) |
|
kid (0.389206) |
|
mga (0.32041) |
|
fco (0.314416) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
ill (0.175593) |
|
sin (0.174948) |
|
nje (0.16592) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
fat (0.147427) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
med (0.116252) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
sug (0.763747) |
|
pro (0.512033) |
|
kid (0.389206) |
|
mga (0.32041) |
|
fco (0.314416) |
|
mgp (0.230681) |
|
tes (0.207814) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
ill (0.175593) |
|
sin (0.174948) |
|
nje (0.16592) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
fat (0.147427) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
med (0.116252) |
|
spc (0.113366) |
|
jej (0.0989218) |
