Non-Coding RNA Search

Ss1.1-Pig4-TMW8011L18.3

Sequence:


               
               CAAATGCAACTTCTGGAGGATCAGCTGAACAAATCAAGTACCTCGTAGAATTGGGCTGTA
TCAAGCCACTCTGTGATCTCCTCACAGTCATGGACTCTAAGATTGTACAGGTTGCCCTAA
ATGGCTTGGAAAACATCCTGAGGCTTGGAGAACAAGAAGCCAAAAGGAACGGCACTGGCA
TTAATCCTTACTGTGCTTTGATTGAAGAGGCTTATGGTCTGGATAAAATTGAATTCTTAC
AGAGTCATGAAAACCAGGAGATCTACCAGAAGGCCTTTGATCTTATTGAGCATTACTTCG
GGACCGAGGATGAGGACAGCAGCATTGCACCTCAGGTTGACCTTAGCCAGCAGCAGTACA
TCTTCCAGCAGTGTGAGGCGCCTATGGAAGGGTTCCAGCTTTGAAGCAATACTCTGCTTT
CATGTTCCTGTGTCAGACCAGGCTACCCAGTCAAGTCCTCTTGTGGAGCCCACAGTCCTC
ATGGAGCTAACTTCTCAAATGTTTTCCATAATACTGTTTGCGCTCATTTGCTTGCCTTGC
GCACCTGCTCTCTTACACACATCTGGAAAACCTCTGGCTCTCTGTGGTGGAATACCCTTC
TAATAAAAGGGTGACCAGAACGGCCCACTCTCTTATGGAAAATCCTTAAGCTTTGGAGAT
CCGCACTTAAATATTATAAAGAGTCATGGGAATGTACACATATTAAAATGTGGCTCCCTT
TTTTTGTGGGGGAAAAAGAGGACTCCTCCTCATTCCCTTTAATGTGGGGAAAAAAATACT
GACATTAAAAGATGAAACTAAAACTTTATCTTGAATTTCACACAACTACTTGCAACAAGG
GAGATGTTTAGACCTGTTGTGTACTTCAGAGTACTTTTCATGAGTTCTTCCACAGTGAAC
CCTTGGATTACCTGGTGGCTTTTTCTAGCCAAGTTTGCATTAATCCTTACTGAAATTGGA
TGGTTTTCTTTCCTCTATTGGCGCCATTCTCCACAGATATTAAAGTTAAACCATCTGCTC
CCTCACCTTCAGCCTTCAGTGAATGTGCTTTCTAGTTGTCAGGAATGCTGAAGAATTAAC
ACTTTGACTCTTAAATGTGATGCTGGTTTGAAGATTCCCTTATAGCAGAAAGGAGAGGGG
CACATATAATTTGTATGGCTATTGCTTCTCTTTGGTTTTATGTGTCTTAGGATTTGGAAG
TGGTTCAATTCCAATGCTGGTTTGAAGATTTAGCATCCTTAGTGATTGAAACCATATCTT
ATAATTCAATAAAAAAGTTAAAAAACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATGCAACTTCTGGAGGATCAGCTGAACAAATCAAGTACCTCGTAGAATTGGGCTGTA
TCAAGCCACTCTGTGATCTCCTCACAGTCATGGACTCTAAGATTGTACAGGTTGCCCTAA
ATGGCTTGGAAAACATCCTGAGGCTTGGAGAACAAGAAGCCAAAAGGAACGGCACTGGCA
TTAATCCTTACTGTGCTTTGATTGAAGAGGCTTATGGTCTGGATAAAATTGAATTCTTAC
AGAGTCATGAAAACCAGGAGATCTACCAGAAGGCCTTTGATCTTATTGAGCATTACTTCG
GGACCGAGGATGAGGACAGCAGCATTGCACCTCAGGTTGACCTTAGCCAGCAGCAGTACA
TCTTCCAGCAGTGTGAGGCGCCTATGGAAGGGTTCCAGCTTTGAAGCAATACTCTGCTTT
CATGTTCCTGTGTCAGACCAGGCTACCCAGTCAAGTCCTCTTGTGGAGCCCACAGTCCTC
ATGGAGCTAACTTCTCAAATGTTTTCCATAATACTGTTTGCGCTCATTTGCTTGCCTTGC
GCACCTGCTCTCTTACACACATCTGGAAAACCTCTGGCTCTCTGTGGTGGAATACCCTTC
TAATAAAAGGGTGACCAGAACGGCCCACTCTCTTATGGAAAATCCTTAAGCTTTGGAGAT
CCGCACTTAAATATTATAAAGAGTCATGGGAATGTACACATATTAAAATGTGGCTCCCTT
TTTTTGTGGGGGAAAAAGAGGACTCCTCCTCATTCCCTTTAATGTGGGGAAAAAAATACT
GACATTAAAAGATGAAACTAAAACTTTATCTTGAATTTCACACAACTACTTGCAACAAGG
GAGATGTTTAGACCTGTTGTGTACTTCAGAGTACTTTTCATGAGTTCTTCCACAGTGAAC
CCTTGGATTACCTGGTGGCTTTTTCTAGCCAAGTTTGCATTAATCCTTACTGAAATTGGA
TGGTTTTCTTTCCTCTATTGGCGCCATTCTCCACAGATATTAAAGTTAAACCATCTGCTC
CCTCACCTTCAGCCTTCAGTGAATGTGCTTTCTAGTTGTCAGGAATGCTGAAGAATTAAC
ACTTTGACTCTTAAATGTGATGCTGGTTTGAAGATTCCCTTATAGCAGAAAGGAGAGGGG
CACATATAATTTGTATGGCTATTGCTTCTCTTTGGTTTTATGTGTCTTAGGATTTGGAAG
TGGTTCAATTCCAATGCTGGTTTGAAGATTTAGCATCCTTAGTGATTGAAACCATATCTT
ATAATTCAATAAAAAAGTTAAAAAACAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TD89_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TD89_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               535-688, - strand, RNAz p=0.959541
               

               
               919-1078, - strand, RNAz p=0.886621

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-688, - strand, RNAz p=0.959541
               

               
               919-1078, - strand, RNAz p=0.886621

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               216-1296, gnl|bosTau2|chr1 (34664126-34665191)
               

               
               216-1296, gnl|Hg17|chr3 (123628710-123627638)
               

               
               216-1296, gnl|Mm7|chr16 (35707931-35708981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-1296, gnl|bosTau2|chr1 (34664126-34665191)
               

               
               216-1296, gnl|Hg17|chr3 (123628710-123627638)
               

               
               216-1296, gnl|Mm7|chr16 (35707931-35708981)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               rec (0.346141)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	535-688, - strand, RNAz p=0.959541
	919-1078, - strand, RNAz p=0.886621

	216-1296, gnl\|bosTau2\|chr1 (34664126-34665191)
	216-1296, gnl\|Hg17\|chr3 (123628710-123627638)
	216-1296, gnl\|Mm7\|chr16 (35707931-35708981)

	rec (0.346141)
	sme (0.305437)
	lun (0.300978)
	eru (0.240096)
	mas (0.210305)
	cty (0.20816)
	cje (0.165235)
	mga (0.160205)
	bfe (0.149858)
	csk (0.140746)
	pla (0.133672)
	tra (0.123092)
	clu (0.119646)
	cbl (0.114797)
	nbm (0.0993246)