Non-Coding RNA Search

Ss1.1-Pig4-TMW8011M23.5

Sequence:


               
               TATTGCCTCCTTATCTACCACTGTAAAAAAACAAAAAAGAGTGAGTCCAATTTGGGAAGA
TATATATGAAAATAGCATGAAGTGAGCTATATCCCCCAGTTTGCAAAATAAGACCAGAAC
TTGGTCCCAGAATCACCCACAGAGACGCCTGCTTTCCACGTAGGAAATTGGATTCCTTTT
TTCCCAGTTATTCATGTCAGACAGCTCTGCAGAGTTTTGAGTCTGCACGGTGAGTCTTCT
GGACATGTGCATAAGTCCTGGATGCAGACGAAGCAGGTGAAATAGGAGCGTTGGACGAAA
GCCCCCTGGGTTCACTTACGCCTTCTCCCATTCCCACGTTCAAAGTCTCTAGGCGAGGGT
ACTCCTTTTGCCACATTTTCCTCACGTGTTGGCAAGTATTAACTATTCACAGAGGTACTG
AAACAATGGTGAAGCCTTTGAAAGATCTGGACACACTGCTGGGATCAAATTTATGAGTTA
TTTAACTTCGTGTCTCTACGGATTAAATGATCTGCTGGTCACAGGTGGGTAGCTTCTTAT
AAAGCTAAAAGCCTCATACCTGGAAATAACTTCCCCAAATAAGGTAATAACTATAATCCC
TCTCATTTTTGGGGAACAGTGGTACTGAATAATAGGACATTAAAATATATATATATATGT
ACACATTATGAAAAACCTGTTCTTATCTACCCTTGGATGATAAAGAGAGGAAAATTCCCC
AAATTTCTAGGTACTTTGATATATATAATTACCACCCACTAAACACTGCACTGCTTGGAA
AAATATTTCACACCCTCTTAAAAATGTATAATTTAAGAAGGTAATTATGCTTGTAACAGA
CGGTACTTCAGTGATCCGAGAAGTTTCTTCATTTATACATTCTGTCTCTGCTCTTTCTAG
CCTTTGTGCACACAGTAGTTGTTTCTCTTTAAATTGTACTCAAGCTAGGAATGATCATGT
GAAAAAGATGTACGTGTGAGCTACTACTGTCACCTCGTGTAATGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGCCTCCTTATCTACCACTGTAAAAAAACAAAAAAGAGTGAGTCCAATTTGGGAAGA
TATATATGAAAATAGCATGAAGTGAGCTATATCCCCCAGTTTGCAAAATAAGACCAGAAC
TTGGTCCCAGAATCACCCACAGAGACGCCTGCTTTCCACGTAGGAAATTGGATTCCTTTT
TTCCCAGTTATTCATGTCAGACAGCTCTGCAGAGTTTTGAGTCTGCACGGTGAGTCTTCT
GGACATGTGCATAAGTCCTGGATGCAGACGAAGCAGGTGAAATAGGAGCGTTGGACGAAA
GCCCCCTGGGTTCACTTACGCCTTCTCCCATTCCCACGTTCAAAGTCTCTAGGCGAGGGT
ACTCCTTTTGCCACATTTTCCTCACGTGTTGGCAAGTATTAACTATTCACAGAGGTACTG
AAACAATGGTGAAGCCTTTGAAAGATCTGGACACACTGCTGGGATCAAATTTATGAGTTA
TTTAACTTCGTGTCTCTACGGATTAAATGATCTGCTGGTCACAGGTGGGTAGCTTCTTAT
AAAGCTAAAAGCCTCATACCTGGAAATAACTTCCCCAAATAAGGTAATAACTATAATCCC
TCTCATTTTTGGGGAACAGTGGTACTGAATAATAGGACATTAAAATATATATATATATGT
ACACATTATGAAAAACCTGTTCTTATCTACCCTTGGATGATAAAGAGAGGAAAATTCCCC
AAATTTCTAGGTACTTTGATATATATAATTACCACCCACTAAACACTGCACTGCTTGGAA
AAATATTTCACACCCTCTTAAAAATGTATAATTTAAGAAGGTAATTATGCTTGTAACAGA
CGGTACTTCAGTGATCCGAGAAGTTTCTTCATTTATACATTCTGTCTCTGCTCTTTCTAG
CCTTTGTGCACACAGTAGTTGTTTCTCTTTAAATTGTACTCAAGCTAGGAATGATCATGT
GAAAAAGATGTACGTGTGAGCTACTACTGTCACCTCGTGTAATGACTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               114-259, - strand, RNAz p=0.947101

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-259, - strand, RNAz p=0.947101

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-1008, gnl|bosTau2|chr11 (79682279-79683295)
               

               
               3-1008, gnl|Hg17|chr13 (36320172-36319251)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1008, gnl|bosTau2|chr11 (79682279-79683295)
               

               
               3-1008, gnl|Hg17|chr13 (36320172-36319251)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ret (0.257467)
               

               
               bla (0.248694)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	3-1008, gnl\|bosTau2\|chr11 (79682279-79683295)
	3-1008, gnl\|Hg17\|chr13 (36320172-36319251)

	ret (0.257467)
	bla (0.248694)
	rec (0.17307)
	csk (0.140746)
	ova (0.129132)
	ecc (0.115035)
	spc (0.113366)