Non-Coding RNA Search

Ss1.1-Pig4-TMW8011O09.3

Sequence:


               
               TTGGGAGATCATGAAACCAACTATACGCTACATCTAGTTGAGATTGCCGGCAATGTCCCC
AATGCACTCCCAGAACACAAAGATTTGATGTTTTCTACTTGGGATCACAAAGCAAAAGGA
CATGTCAACTGTCCAGAAAGTTATTCAGGAGGCTGGTGGTGCCATGACGTCTGTGGGGAA
AACAACCTAAATGGCATCTATAAGAAGCCAAAAGCAAAAATTAAGCCAGAGAGAAGAGGA
ATATGCTGGAAGTCTCAAAATGGAAGGTTATACTCTATCAAATCAACCAAAATGTTGATC
CATCCAATAGATTCAGAGAGTTCTGAATTAACTAAAGCAATTTAAAAAGCCAATAAATTA
AACATTACACTCATCCCAAATTACTATATTTAATAATTTAGTATTAAATCTCTAATAGAA
GGCTTTAGAAGAAAGTATTTATATAAAACCTACTACCAACTTAATATTAAACATATCATT
ACCTCAAAGAATACAATTTACCTTTCTCAATCAAAATTCTTCTGATGATCAATACATGCA
TATATTCTGTACTGTGTGAATCAATTTTAGATGATCAAAATCTAAATTTTAACCAGTGGG
TGCATTTTTAAATTAACTAAATAACAAACCTGGAAAAAGATTTTTGTTTTTAAAGCCATT
ATGTAGGCTAATTTCACAACTTCCCTAGTTTAAAAACTTTCTTTGCTAAAATTCTAAACG
AATAAATATGAAGGACTGTATCATTCTTATATGCTTAATTTCAAAACTAAAATTTTGTTC
AGAGAACATGAAAATCTGTAGTAAGAATTTTAAAACTGATGCTTCATTAGCTACAATATA
ATTTGAGGTAAATGTTTGGCATGCTTTATTTATGAAGCCAAATGAAGGGATGAAATACTG
CACTGAAACAGAATCATGATCTTAAACAAATACAATAAATCAGGGTTACAAAGTGATGTT
GACTTTAAATAGCAGGTATCACTGTACTTAATTGTTAGCTTATCTACACTGTATACATTT
TATATATCCTAACACTTAATACTGTGACAACAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGAGATCATGAAACCAACTATACGCTACATCTAGTTGAGATTGCCGGCAATGTCCCC
AATGCACTCCCAGAACACAAAGATTTGATGTTTTCTACTTGGGATCACAAAGCAAAAGGA
CATGTCAACTGTCCAGAAAGTTATTCAGGAGGCTGGTGGTGCCATGACGTCTGTGGGGAA
AACAACCTAAATGGCATCTATAAGAAGCCAAAAGCAAAAATTAAGCCAGAGAGAAGAGGA
ATATGCTGGAAGTCTCAAAATGGAAGGTTATACTCTATCAAATCAACCAAAATGTTGATC
CATCCAATAGATTCAGAGAGTTCTGAATTAACTAAAGCAATTTAAAAAGCCAATAAATTA
AACATTACACTCATCCCAAATTACTATATTTAATAATTTAGTATTAAATCTCTAATAGAA
GGCTTTAGAAGAAAGTATTTATATAAAACCTACTACCAACTTAATATTAAACATATCATT
ACCTCAAAGAATACAATTTACCTTTCTCAATCAAAATTCTTCTGATGATCAATACATGCA
TATATTCTGTACTGTGTGAATCAATTTTAGATGATCAAAATCTAAATTTTAACCAGTGGG
TGCATTTTTAAATTAACTAAATAACAAACCTGGAAAAAGATTTTTGTTTTTAAAGCCATT
ATGTAGGCTAATTTCACAACTTCCCTAGTTTAAAAACTTTCTTTGCTAAAATTCTAAACG
AATAAATATGAAGGACTGTATCATTCTTATATGCTTAATTTCAAAACTAAAATTTTGTTC
AGAGAACATGAAAATCTGTAGTAAGAATTTTAAAACTGATGCTTCATTAGCTACAATATA
ATTTGAGGTAAATGTTTGGCATGCTTTATTTATGAAGCCAAATGAAGGGATGAAATACTG
CACTGAAACAGAATCATGATCTTAAACAAATACAATAAATCAGGGTTACAAAGTGATGTT
GACTTTAAATAGCAGGTATCACTGTACTTAATTGTTAGCTTATCTACACTGTATACATTT
TATATATCCTAACACTTAATACTGTGACAACAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61859184|ref|XP_580705.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859184|ref|XP_580705.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-339, - strand, RNAz p=0.749255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-339, - strand, RNAz p=0.749255

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               144-1039, gnl|bosTau2|chr3 (56893959-56894883)
               

               
               144-1039, gnl|Hg17|chr1 (62782320-62783225)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-1039, gnl|bosTau2|chr3 (56893959-56894883)
               

               
               144-1039, gnl|Hg17|chr1 (62782320-62783225)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eli (0.151814)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

	144-1039, gnl\|bosTau2\|chr3 (56893959-56894883)
	144-1039, gnl\|Hg17\|chr1 (62782320-62783225)