Ss1.1-Pig4-TMW8011P03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAACAAGCTGTTTGGTGCTCCCGAGCCTTCCACCATCGCCCGCTCTCTGCCAACCACTG TCCCAGAGTCACCAAACTACCGCAATGCTAGGACTCCCCGCACGCCCCGGACACCACAGC TCAAAGACTCTAGCCAGACATCACGGTTTTACCCAGTGGTGAAGGAAGGTCGGACATTAG ATGCTAAGATGCCGCGGAAAAGAAAGACAAGACACAGCTCGAACCCGCCGTTAGAGAGTC ACGTGGGCTGGGTGATGGATTCCCGAGAGCACAGGCCCCGGACTGCTTCCATCAGCTCCA GCCCCTCAGAAGGCACCCCTGCTGTTGGCAGCTATGGCTGTACCCCTCAGTCGTTGCCCA AGTTCCAACATCCTTCCCATGAGCTGCTCAAGGAAAATGGCTTCACACAACACGTCTACC ACAAGTATCGTAGGCGCTGCCTTAACGAGCGGAAACGCTTAGGCATTGGCCAGTCTCAGG AGATGAACACTCTCTTCCGCTTCTGGTCTTTCTTCCTCCGAGATCACTTTAACAAGAAGA TGTATGAGGAATTCAAGCAGCTGGCTCTGGAGGATGCCAAAGAAGGCTACAGGTATGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAACAAGCTGTTTGGTGCTCCCGAGCCTTCCACCATCGCCCGCTCTCTGCCAACCACTG TCCCAGAGTCACCAAACTACCGCAATGCTAGGACTCCCCGCACGCCCCGGACACCACAGC TCAAAGACTCTAGCCAGACATCACGGTTTTACCCAGTGGTGAAGGAAGGTCGGACATTAG ATGCTAAGATGCCGCGGAAAAGAAAGACAAGACACAGCTCGAACCCGCCGTTAGAGAGTC ACGTGGGCTGGGTGATGGATTCCCGAGAGCACAGGCCCCGGACTGCTTCCATCAGCTCCA GCCCCTCAGAAGGCACCCCTGCTGTTGGCAGCTATGGCTGTACCCCTCAGTCGTTGCCCA AGTTCCAACATCCTTCCCATGAGCTGCTCAAGGAAAATGGCTTCACACAACACGTCTACC ACAAGTATCGTAGGCGCTGCCTTAACGAGCGGAAACGCTTAGGCATTGGCCAGTCTCAGG AGATGAACACTCTCTTCCGCTTCTGGTCTTTCTTCCTCCGAGATCACTTTAACAAGAAGA TGTATGAGGAATTCAAGCAGCTGGCTCTGGAGGATGCCAAAGAAGGCTACAGGTATGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 326-445, - strand, RNAz p=0.871541 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 326-445, - strand, RNAz p=0.871541 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-191, gnl|bosTau2|chr7 (44720556-44720746) | |
| 1-191, gnl|canFam2|chr4 (58207652-58207429) | |
| 1-191, gnl|danRer3|chr17 (32127370-32127647) | |
| 1-191, gnl|dasNov1|scaffold_12884 (40813-41036) | |
| 1-191, gnl|echTel1|scaffold_324332 (95933-96156) | |
| 1-191, gnl|fr1|chrUn (186867033-186867253) | |
| 1-191, gnl|galGal2|chr13 (11023644-11023419) | |
| 1-191, gnl|hg17|chr5 (154163281-154163506) | |
| 1-191, gnl|Hg17|chr5 (154163311-154163501) | |
| 1-191, gnl|loxAfr1|scaffold_119 (252763-252986) | |
| 1-191, gnl|mm7|chr11 (58132537-58132760) | |
| 1-191, gnl|Mm7|chr11 (58132565-58132755) | |
| 1-191, gnl|monDom2|scaffold_6 (51511864-51511645) | |
| 1-191, gnl|oryCun1|scaffold_211112 (34198-33975) | |
| 1-191, gnl|panTro1|chr4_random (16251831-16252056) | |
| 1-191, gnl|rheMac2|chr6 (151172764-151172989) | |
| 1-191, gnl|rn3|chr10 (43680426-43680649) | |
| 1-191, gnl|tetNig1|chr7 (7776897-7777116) | |
| 1-191, gnl|xenTro1|scaffold_10 (710973-710754) | |
| 293-445, gnl|bosTau2|chr7 (44722180-44722332) | |
| 293-445, gnl|canFam2|chr4 (58206307-58206118) | |
| 293-445, gnl|danRer3|chr9 (1023267-1023077) | |
| 293-445, gnl|dasNov1|scaffold_12884 (42525-42721) | |
| 293-445, gnl|echTel1|scaffold_324332 (97925-98114) | |
| 293-445, gnl|fr1|chrUn (186867510-186867694) | |
| 293-445, gnl|galGal2|chr13 (11022881-11022692) | |
| 293-445, gnl|hg17|chr5 (154165604-154165793) | |
| 293-445, gnl|Hg17|chr5 (154165631-154165783) | |
| 293-445, gnl|loxAfr1|scaffold_119 (254772-254963) | |
| 293-445, gnl|mm7|chr11 (58134092-58134282) | |
| 293-445, gnl|Mm7|chr11 (58134122-58134274) | |
| 293-445, gnl|monDom2|scaffold_6 (51508753-51508583) | |
| 293-445, gnl|oryCun1|scaffold_211112 (32677-32490) | |
| 293-445, gnl|panTro1|chr4_random (16254068-16254257) | |
| 293-445, gnl|rheMac2|chr6 (151175021-151175210) | |
| 293-445, gnl|rn3|chr10 (43682342-43682531) | |
| 293-445, gnl|tetNig1|chr7 (7777398-7777562) | |
| 293-445, gnl|xenTro1|scaffold_10 (709974-709789) | |
| 303-440, gnl|bosTau2|chr17 (18858297-18858434) | |
| 303-440, gnl|Hg17|chr4 (129478215-129478352) | |
| 303-440, gnl|Mm7|chr3 (40807793-40807930) | |
| 447-594, gnl|bosTau2|chr17 (18858782-18858929) | |
| 447-594, gnl|canFam2|chr19 (15787698-15787522) | |
| 447-594, gnl|danRer3|chr17 (32129307-32129463) | |
| 447-594, gnl|dasNov1|scaffold_86965 (1140-1316) | |
| 447-594, gnl|echTel1|scaffold_324332 (100722-100879) | |
| 447-594, gnl|fr1|chrUn (186867773-186867924) | |
| 447-594, gnl|galGal2|chr4 (34901669-34901838) | |
| 447-594, gnl|hg17|chr4 (129479274-129479450) | |
| 447-594, gnl|Hg17|chr4 (129479280-129479427) | |
| 447-594, gnl|loxAfr1|scaffold_12290 (55066-55242) | |
| 447-594, gnl|mm7|chr3 (40808329-40808500) | |
| 447-594, gnl|Mm7|chr3 (40808335-40808482) | |
| 447-594, gnl|monDom2|scaffold_137 (1502253-1502418) | |
| 447-594, gnl|oryCun1|scaffold_189400 (6331-6507) | |
| 447-594, gnl|panTro1|chr3 (146405373-146405549) | |
| 447-594, gnl|rheMac2|chr5 (120537553-120537729) | |
| 447-594, gnl|rn3|chr2 (127930178-127930352) | |
| 447-594, gnl|tetNig1|chr10 (12353894-12353739) | |
| 447-594, gnl|xenTro1|scaffold_10 (709709-709551) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-191, gnl|bosTau2|chr7 (44720556-44720746) | |
| 1-191, gnl|canFam2|chr4 (58207652-58207429) | |
| 1-191, gnl|danRer3|chr17 (32127370-32127647) | |
| 1-191, gnl|dasNov1|scaffold_12884 (40813-41036) | |
| 1-191, gnl|echTel1|scaffold_324332 (95933-96156) | |
| 1-191, gnl|fr1|chrUn (186867033-186867253) | |
| 1-191, gnl|galGal2|chr13 (11023644-11023419) | |
| 1-191, gnl|hg17|chr5 (154163281-154163506) | |
| 1-191, gnl|Hg17|chr5 (154163311-154163501) | |
| 1-191, gnl|loxAfr1|scaffold_119 (252763-252986) | |
| 1-191, gnl|mm7|chr11 (58132537-58132760) | |
| 1-191, gnl|Mm7|chr11 (58132565-58132755) | |
| 1-191, gnl|monDom2|scaffold_6 (51511864-51511645) | |
| 1-191, gnl|oryCun1|scaffold_211112 (34198-33975) | |
| 1-191, gnl|panTro1|chr4_random (16251831-16252056) | |
| 1-191, gnl|rheMac2|chr6 (151172764-151172989) | |
| 1-191, gnl|rn3|chr10 (43680426-43680649) | |
| 1-191, gnl|tetNig1|chr7 (7776897-7777116) | |
| 1-191, gnl|xenTro1|scaffold_10 (710973-710754) | |
| 293-445, gnl|bosTau2|chr7 (44722180-44722332) | |
| 293-445, gnl|canFam2|chr4 (58206307-58206118) | |
| 293-445, gnl|danRer3|chr9 (1023267-1023077) | |
| 293-445, gnl|dasNov1|scaffold_12884 (42525-42721) | |
| 293-445, gnl|echTel1|scaffold_324332 (97925-98114) | |
| 293-445, gnl|fr1|chrUn (186867510-186867694) | |
| 293-445, gnl|galGal2|chr13 (11022881-11022692) | |
| 293-445, gnl|hg17|chr5 (154165604-154165793) | |
| 293-445, gnl|Hg17|chr5 (154165631-154165783) | |
| 293-445, gnl|loxAfr1|scaffold_119 (254772-254963) | |
| 293-445, gnl|mm7|chr11 (58134092-58134282) | |
| 293-445, gnl|Mm7|chr11 (58134122-58134274) | |
| 293-445, gnl|monDom2|scaffold_6 (51508753-51508583) | |
| 293-445, gnl|oryCun1|scaffold_211112 (32677-32490) | |
| 293-445, gnl|panTro1|chr4_random (16254068-16254257) | |
| 293-445, gnl|rheMac2|chr6 (151175021-151175210) | |
| 293-445, gnl|rn3|chr10 (43682342-43682531) | |
| 293-445, gnl|tetNig1|chr7 (7777398-7777562) | |
| 293-445, gnl|xenTro1|scaffold_10 (709974-709789) | |
| 303-440, gnl|bosTau2|chr17 (18858297-18858434) | |
| 303-440, gnl|Hg17|chr4 (129478215-129478352) | |
| 303-440, gnl|Mm7|chr3 (40807793-40807930) | |
| 447-594, gnl|bosTau2|chr17 (18858782-18858929) | |
| 447-594, gnl|canFam2|chr19 (15787698-15787522) | |
| 447-594, gnl|danRer3|chr17 (32129307-32129463) | |
| 447-594, gnl|dasNov1|scaffold_86965 (1140-1316) | |
| 447-594, gnl|echTel1|scaffold_324332 (100722-100879) | |
| 447-594, gnl|fr1|chrUn (186867773-186867924) | |
| 447-594, gnl|galGal2|chr4 (34901669-34901838) | |
| 447-594, gnl|hg17|chr4 (129479274-129479450) | |
| 447-594, gnl|Hg17|chr4 (129479280-129479427) | |
| 447-594, gnl|loxAfr1|scaffold_12290 (55066-55242) | |
| 447-594, gnl|mm7|chr3 (40808329-40808500) | |
| 447-594, gnl|Mm7|chr3 (40808335-40808482) | |
| 447-594, gnl|monDom2|scaffold_137 (1502253-1502418) | |
| 447-594, gnl|oryCun1|scaffold_189400 (6331-6507) | |
| 447-594, gnl|panTro1|chr3 (146405373-146405549) | |
| 447-594, gnl|rheMac2|chr5 (120537553-120537729) | |
| 447-594, gnl|rn3|chr2 (127930178-127930352) | |
| 447-594, gnl|tetNig1|chr10 (12353894-12353739) | |
| 447-594, gnl|xenTro1|scaffold_10 (709709-709551) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |