Non-Coding RNA Search

Ss1.1-Pig4-TMW8011P05.5

Sequence:


               
               GGAGGTTCGCGGCAGGTCAATGGCGGCTGGTGGCAGCGATCCGCGGGCTGGTGATGTAGA
GGAGGATGCCTCACAACTCATTTTTCCCAAAGAGTTTGAAACAGCTGAGACACTTCTAAA
TTCAGAAGTTCACATGCTTCTGGAGCATCGAAAGCAACAGAATGAGAGTGCAGAGGATGA
ACAGGAACTTTCTGAGGTCTTCATGAAAACTTTAAACTACACAGCCCGTTTCAGTCGTTT
CAAAAACAGAGAAACCATTGCCAGTGTACGTAGCTTGCTGCTCCAGAAGAAGCTTCATAA
GTTTGAGTTGGCCTGTTTGGCCAACCTTTGTCCAGAGACTGCTGAGGAGTCCAAGGCTCT
GATTCCAAGCCTGGAGGGCCGGTTTGAAGATGAGGAGCTACAGCAGATTCTTGATGATAT
CCAGACCAAGCGCAGCTTTCAGTATTAATCTCCAGATATCCCTGCTGCTGGGGGAGCCAC
AGGACATCTGTGACAGGGTCTGGGACTGGCTGGCACAATTCTATTGCAGAAGACACTTGG
GCTTCCTTTGGTTAGAACAACCCAGAACTTGGTCTTGGTTGAGGACCAGGCTCTTTCACA
CTTGACTGTTGGACCATGATAACCACTGTAACCCTGGGAGGCTTTGCAGTGGCTGCCTGA
GCTAATTGACTACTGACTGCTTCATATCATGGTTTTTGGCCCTTTTGTTTTGTTTTTTGA
TTTGTAACATTTTATGTTTAATTTCAGTGTGTTTATAACTTTTGAAACTATAGTAGAACA
TATAAAACTGGTATGGGAAACAGTCTTACCTAAATGCAAAAGGAGAAATTAAACCAGACC
TATATCATTGTTTGAAATTCTTAAAGAAAGGATGCTGGAGCCTTGGCATCATTGTACTTA
ACTCAGGAGACAGGGAGAGGCTATAGGAAAAAGAGTCATACCTAAGGATAATTGCTGAGT
GTTGTGGCTTAAGATGGACGTGTACTGTGTTTTTTTCCTGGATTGTTTTGGAACATAGAT
TTGGAGTAAGAAGTCTTACTTTGTCACTCGCAAATTCAGATTTTTCCTTCCTTGGCCAGA
TGTGAAAGAGAACACTTCATAGTGTCCTCATATGGGCCATCAGGTTCAAACCTCTGGTTT
CGTGCTTAGCAGCAGGCTTTCTATGATGAGAGTAGCTTGAAAGGGGGGAGCATGCCACTT
CCTGAGCCACTACAATGACATCCCTCCATCTGAGGCTGGTTGGGGGAAGAACACTTTAGT
AGCTGAGCATCGTGGCTCTGAATTTTCTGAAGGGAAATATGCCTCTATTCTTCACAGTTT
GGGGATTTCTCTTTGAGGCACTTGTTGGCTCCAAGTGAATTCATGATCCATGGAAAAAGT
TGGGGAAAGAACAAAGTTGGCTTTTAAAGTCAAAGTAGAGGTTCCTGTTGTGGCTCAGCA
GTAACAAACCTGCCTAGTATCCATGAGGACACAGGTTCGATCCCTGGCCTTGCTCAGTGG
GTTAAAGGTCCAGCATTGTTGTGGCTGTGGTATAGGCCGGCAACTGCAATTCCAATTCAA
CCCCTAGCCTGAGAACTTTTCTTATGCTTCCGGTTTGGCCCTAAAAAGAAAAAAAAAATT
TTCTTTTTAATAGGTAGTTTTTGAGCTCCCGTCGTGGCTCAGTGGTTAACAAATCCGACT
AGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGATCCGGTG
TTGCCCTGAGCTGTGGTGTAGGTTCAGACGTGGCTCGGATCCCAAGTTGCTATGGCTCTG
ACATAGGCCGGCAGCTACAGCTCCAATTCGACCCCTAGTCTGGGAACCTCCATATGCCAC
GGGAGCGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGTTCGCGGCAGGTCAATGGCGGCTGGTGGCAGCGATCCGCGGGCTGGTGATGTAGA
GGAGGATGCCTCACAACTCATTTTTCCCAAAGAGTTTGAAACAGCTGAGACACTTCTAAA
TTCAGAAGTTCACATGCTTCTGGAGCATCGAAAGCAACAGAATGAGAGTGCAGAGGATGA
ACAGGAACTTTCTGAGGTCTTCATGAAAACTTTAAACTACACAGCCCGTTTCAGTCGTTT
CAAAAACAGAGAAACCATTGCCAGTGTACGTAGCTTGCTGCTCCAGAAGAAGCTTCATAA
GTTTGAGTTGGCCTGTTTGGCCAACCTTTGTCCAGAGACTGCTGAGGAGTCCAAGGCTCT
GATTCCAAGCCTGGAGGGCCGGTTTGAAGATGAGGAGCTACAGCAGATTCTTGATGATAT
CCAGACCAAGCGCAGCTTTCAGTATTAATCTCCAGATATCCCTGCTGCTGGGGGAGCCAC
AGGACATCTGTGACAGGGTCTGGGACTGGCTGGCACAATTCTATTGCAGAAGACACTTGG
GCTTCCTTTGGTTAGAACAACCCAGAACTTGGTCTTGGTTGAGGACCAGGCTCTTTCACA
CTTGACTGTTGGACCATGATAACCACTGTAACCCTGGGAGGCTTTGCAGTGGCTGCCTGA
GCTAATTGACTACTGACTGCTTCATATCATGGTTTTTGGCCCTTTTGTTTTGTTTTTTGA
TTTGTAACATTTTATGTTTAATTTCAGTGTGTTTATAACTTTTGAAACTATAGTAGAACA
TATAAAACTGGTATGGGAAACAGTCTTACCTAAATGCAAAAGGAGAAATTAAACCAGACC
TATATCATTGTTTGAAATTCTTAAAGAAAGGATGCTGGAGCCTTGGCATCATTGTACTTA
ACTCAGGAGACAGGGAGAGGCTATAGGAAAAAGAGTCATACCTAAGGATAATTGCTGAGT
GTTGTGGCTTAAGATGGACGTGTACTGTGTTTTTTTCCTGGATTGTTTTGGAACATAGAT
TTGGAGTAAGAAGTCTTACTTTGTCACTCGCAAATTCAGATTTTTCCTTCCTTGGCCAGA
TGTGAAAGAGAACACTTCATAGTGTCCTCATATGGGCCATCAGGTTCAAACCTCTGGTTT
CGTGCTTAGCAGCAGGCTTTCTATGATGAGAGTAGCTTGAAAGGGGGGAGCATGCCACTT
CCTGAGCCACTACAATGACATCCCTCCATCTGAGGCTGGTTGGGGGAAGAACACTTTAGT
AGCTGAGCATCGTGGCTCTGAATTTTCTGAAGGGAAATATGCCTCTATTCTTCACAGTTT
GGGGATTTCTCTTTGAGGCACTTGTTGGCTCCAAGTGAATTCATGATCCATGGAAAAAGT
TGGGGAAAGAACAAAGTTGGCTTTTAAAGTCAAAGTAGAGGTTCCTGTTGTGGCTCAGCA
GTAACAAACCTGCCTAGTATCCATGAGGACACAGGTTCGATCCCTGGCCTTGCTCAGTGG
GTTAAAGGTCCAGCATTGTTGTGGCTGTGGTATAGGCCGGCAACTGCAATTCCAATTCAA
CCCCTAGCCTGAGAACTTTTCTTATGCTTCCGGTTTGGCCCTAAAAAGAAAAAAAAAATT
TTCTTTTTAATAGGTAGTTTTTGAGCTCCCGTCGTGGCTCAGTGGTTAACAAATCCGACT
AGGAACCATGAGGTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTGGGTTAACGATCCGGTG
TTGCCCTGAGCTGTGGTGTAGGTTCAGACGTGGCTCGGATCCCAAGTTGCTATGGCTCTG
ACATAGGCCGGCAGCTACAGCTCCAATTCGACCCCTAGTCTGGGAACCTCCATATGCCAC
GGGAGCGGCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62739756|gb|AAH93797.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62739756|gb|AAH93797.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1030-1147, - strand, RNAz p=0.756262

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1030-1147, - strand, RNAz p=0.756262

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               368-656, gnl|bosTau2|chr2 (1501828-1501526)
               

               
               368-656, gnl|Hg17|chr2 (128321991-128321695)
               

               
               368-656, gnl|Mm7|chr18 (32188126-32188533)
               


               
               669-1413, gnl|bosTau2|chr2 (1501464-1500699)
               

               
               669-1413, gnl|Hg17|chr2 (128321638-128320124)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               368-656, gnl|bosTau2|chr2 (1501828-1501526)
               

               
               368-656, gnl|Hg17|chr2 (128321991-128321695)
               

               
               368-656, gnl|Mm7|chr18 (32188126-32188533)
               


               
               669-1413, gnl|bosTau2|chr2 (1501464-1500699)
               

               
               669-1413, gnl|Hg17|chr2 (128321638-128320124)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ill (0.526778)
               

               
               eye (0.341006)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.526778)
               

               
               eye (0.341006)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	368-656, gnl\|bosTau2\|chr2 (1501828-1501526)
	368-656, gnl\|Hg17\|chr2 (128321991-128321695)
	368-656, gnl\|Mm7\|chr18 (32188126-32188533)

	669-1413, gnl\|bosTau2\|chr2 (1501464-1500699)
	669-1413, gnl\|Hg17\|chr2 (128321638-128320124)

	ill (0.526778)
	eye (0.341006)
	pgl (0.236967)
	spc (0.226732)
	hea (0.204499)
	fcc (0.197785)
	cje (0.165235)
	ski (0.146735)
	liv (0.146284)
	thg (0.126791)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)