Non-Coding RNA Search

Ss1.1-Pig4-TMW8011P23.5

Sequence:


               
               CTAAAACAGTGAATATTTATTTCCCTAAAAAAGAGGCTGTTACTTTTGACCAAGCAAACC
CAACGCAAATATTAGGTAAACTAAAGGAACTTAATGGAACTGCATCTGAAGATAAGAAGT
TAACTGAGGAAGACTTGGTACTTCTTGAAAAGATACTGTCTCTAATATGTAATAATTCTT
CAGAAAAACCTACAGCGCAGCAACTGCAGACTTTGTGGAAAGCTGTTAACTGGCCTGAAG
ATATTGTCTTTCCTGCGCTTGACATTCTTCGGTTGTCAATTAAACATCCCAGTGTGAATG
AGAACTTTTGCAATGAAAAAGAAGGAACTCAGTTCAGCAGCCATCTTATCAATCTTCTGA
ACCCTAAAGGAAAGCCAGCAAACCAGCTGCTTGCCCTCAGGACTTTTTGCAATTGTTTTG
TTGGCAAGGCAGGACAAAAGCTCATGATGTCCCAGAGGGAATCACTAATGTCCCAGGCAA
TAGAACTGAAATCAGGGAGCAATAAGAACATTCACATTGCTCTGGCTACACTGACCCTGA
ACTATTCTGTTTGTTTTCATAAAGACCATAACATTGAAGGGAAGGCTCAATGCTTGTCTG
TAATTAGCACAGTCTTGGAAGTTGTACAAGACCTGGAAGCCACTTTTAGACTTCTTGTGG
CTCTTGGGACACTTATCAGTGATGACTCAAATGCTGTACAATTAGCCAAGTCTTTAGGAG
TTGATTCTCAAATAAAAAAGTTTGCATCGGTATCAGAACCAGCTAAAGTAAGTGAATGCT
GTAGGCTTATCCTAAATTTGCTGTAACAGAGGGGTGGGGGCTGAGATTTTAAATTGATTA
GTGTTTTTTTCCCTCACATTTTACATGACTGATTACAGATGATAAAAAAAAAAAAAGATT
GCTGTGGATTAAGTAAAATTTCAGATCTTGTAAAGTGGGGGGAAGGGTAAACAAAGAAGG
AGAAATAAAATTTTTGCACTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAACAGTGAATATTTATTTCCCTAAAAAAGAGGCTGTTACTTTTGACCAAGCAAACC
CAACGCAAATATTAGGTAAACTAAAGGAACTTAATGGAACTGCATCTGAAGATAAGAAGT
TAACTGAGGAAGACTTGGTACTTCTTGAAAAGATACTGTCTCTAATATGTAATAATTCTT
CAGAAAAACCTACAGCGCAGCAACTGCAGACTTTGTGGAAAGCTGTTAACTGGCCTGAAG
ATATTGTCTTTCCTGCGCTTGACATTCTTCGGTTGTCAATTAAACATCCCAGTGTGAATG
AGAACTTTTGCAATGAAAAAGAAGGAACTCAGTTCAGCAGCCATCTTATCAATCTTCTGA
ACCCTAAAGGAAAGCCAGCAAACCAGCTGCTTGCCCTCAGGACTTTTTGCAATTGTTTTG
TTGGCAAGGCAGGACAAAAGCTCATGATGTCCCAGAGGGAATCACTAATGTCCCAGGCAA
TAGAACTGAAATCAGGGAGCAATAAGAACATTCACATTGCTCTGGCTACACTGACCCTGA
ACTATTCTGTTTGTTTTCATAAAGACCATAACATTGAAGGGAAGGCTCAATGCTTGTCTG
TAATTAGCACAGTCTTGGAAGTTGTACAAGACCTGGAAGCCACTTTTAGACTTCTTGTGG
CTCTTGGGACACTTATCAGTGATGACTCAAATGCTGTACAATTAGCCAAGTCTTTAGGAG
TTGATTCTCAAATAAAAAAGTTTGCATCGGTATCAGAACCAGCTAAAGTAAGTGAATGCT
GTAGGCTTATCCTAAATTTGCTGTAACAGAGGGGTGGGGGCTGAGATTTTAAATTGATTA
GTGTTTTTTTCCCTCACATTTTACATGACTGATTACAGATGATAAAAAAAAAAAAAGATT
GCTGTGGATTAAGTAAAATTTCAGATCTTGTAAAGTGGGGGGAAGGGTAAACAAAGAAGG
AGAAATAAAATTTTTGCACTGAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61839889|ref|XP_584728.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61839889|ref|XP_584728.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               598-717, + strand, RNAz p=0.776641

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               598-717, + strand, RNAz p=0.776641

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               239-982, gnl|bosTau2|chr8 (10689261-10689990)
               

               
               239-982, gnl|Hg17|chr9 (26896076-26895343)
               

               
               239-982, gnl|Mm7|chr4 (93962517-93961774)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-982, gnl|bosTau2|chr8 (10689261-10689990)
               

               
               239-982, gnl|Hg17|chr9 (26896076-26895343)
               

               
               239-982, gnl|Mm7|chr4 (93962517-93961774)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               kid (0.389206)
               

               
               fty (0.17584)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               fty (0.17584)

	239-982, gnl\|bosTau2\|chr8 (10689261-10689990)
	239-982, gnl\|Hg17\|chr9 (26896076-26895343)
	239-982, gnl\|Mm7\|chr4 (93962517-93961774)