Non-Coding RNA Search

Ss1.1-Pig4-TMW8012A09.3

Sequence:


               
               GGAGGCGCTGGCGGCGGCGGCGGCGGCGGCTGCGGCGGCGCACGTGGTGACGTGCGAGGG
GGTGCGGCGCGAGCGGGTGGCGGCGGCAGTGTGTCCCGGGCGCGCTAAGGATTTTATTGC
TGACTTGAAACCCCCTATGACAAAAGACTCACGCCAAGGGACTGTCGTTACGCACAGGTG
CTTGTGTCTCTCTGGGGACAGACAACTCTAAACTCGTCCCCAGAGGACTTGAATGAGGAA
AACGACACTCTGAGAAACCAAAGTCCTTTTTCCCAAAGGTTCTGAAAGCAAAAAAGCCNA
------------AAAAAAAAAAAAAAAAAAGCCCAAAAAAAAAAAGAGAAAGTGAGAAAG
TAGTACCCCCTCCCCCCAACAATTCCTCTCCCCCCTTTTCCCCAATCCCCTCTCCCTGCC
CCAAACTCCAACAAAAATCGCTCTCTGGTTTGCAGTCATTTATTTATTGTCCGCTGCAAG
CTGCCCCGAGACACCGCGCAGGGAAGGTGTGCCCCTCGGAATTCTCGGCGCCTCGACTTC
CGACGACAGACGGCCTCGTCCAATCCTGGTGACCCTGCATTGCTCGCAGTTCTGGAGGAT
GCTGCTAATCAACCTTCCGTGACTCACGTGACCTAGTATACCAATGAATAAGGGAATATT
TTAAAACCAGCTATATTATATATATTATATATATATAAGCTATTTATTTCACCTCTCTGT
ATATTGCAGTTTCATGAACCAAGTATTACTGCCTCAACAATTAAAAACAATCAACAAATT
ATTTAAAAAACCAGGAGGCGAGTGGTGGCCCGGGGGCAGGGCTCAGGCACCCTTGGTGTT
TCATTCTTTTTGGTCTGAGGTCGTTTGCTCCTTCATTCATTCAGGCATTAGTCATTCATG
CGTCTAGTCATGCCTTCCTCTATTCATTCATTGACTCAGGCTATGCTCCAGGCACTGTTC
TAGGCACTGAGAACGCAGCCTTAGACAAAGCAGATGGAAACCCTTGCCTCCGGAAAGATT
AAACTGTAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCGCTGGCGGCGGCGGCGGCGGCGGCTGCGGCGGCGCACGTGGTGACGTGCGAGGG
GGTGCGGCGCGAGCGGGTGGCGGCGGCAGTGTGTCCCGGGCGCGCTAAGGATTTTATTGC
TGACTTGAAACCCCCTATGACAAAAGACTCACGCCAAGGGACTGTCGTTACGCACAGGTG
CTTGTGTCTCTCTGGGGACAGACAACTCTAAACTCGTCCCCAGAGGACTTGAATGAGGAA
AACGACACTCTGAGAAACCAAAGTCCTTTTTCCCAAAGGTTCTGAAAGCAAAAAAGCCNA
------------AAAAAAAAAAAAAAAAAAGCCCAAAAAAAAAAAGAGAAAGTGAGAAAG
TAGTACCCCCTCCCCCCAACAATTCCTCTCCCCCCTTTTCCCCAATCCCCTCTCCCTGCC
CCAAACTCCAACAAAAATCGCTCTCTGGTTTGCAGTCATTTATTTATTGTCCGCTGCAAG
CTGCCCCGAGACACCGCGCAGGGAAGGTGTGCCCCTCGGAATTCTCGGCGCCTCGACTTC
CGACGACAGACGGCCTCGTCCAATCCTGGTGACCCTGCATTGCTCGCAGTTCTGGAGGAT
GCTGCTAATCAACCTTCCGTGACTCACGTGACCTAGTATACCAATGAATAAGGGAATATT
TTAAAACCAGCTATATTATATATATTATATATATATAAGCTATTTATTTCACCTCTCTGT
ATATTGCAGTTTCATGAACCAAGTATTACTGCCTCAACAATTAAAAACAATCAACAAATT
ATTTAAAAAACCAGGAGGCGAGTGGTGGCCCGGGGGCAGGGCTCAGGCACCCTTGGTGTT
TCATTCTTTTTGGTCTGAGGTCGTTTGCTCCTTCATTCATTCAGGCATTAGTCATTCATG
CGTCTAGTCATGCCTTCCTCTATTCATTCATTGACTCAGGCTATGCTCCAGGCACTGTTC
TAGGCACTGAGAACGCAGCCTTAGACAAAGCAGATGGAAACCCTTGCCTCCGGAAAGATT
AAACTGTAAAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               177-292, - strand, RNAz p=0.84924

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               177-292, - strand, RNAz p=0.84924

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               98-1016, gnl|bosTau2|chr20 (2507453-2506572)
               

               
               98-1016, gnl|Hg17|chr5 (170816574-170817470)
               

               
               98-1016, gnl|Mm7|chr11 (33069642-33068733)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1016, gnl|bosTau2|chr20 (2507453-2506572)
               

               
               98-1016, gnl|Hg17|chr5 (170816574-170817470)
               

               
               98-1016, gnl|Mm7|chr11 (33069642-33068733)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ski (0.146735)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.146735)

	98-1016, gnl\|bosTau2\|chr20 (2507453-2506572)
	98-1016, gnl\|Hg17\|chr5 (170816574-170817470)
	98-1016, gnl\|Mm7\|chr11 (33069642-33068733)