Non-Coding RNA Search

Ss1.1-Pig4-TMW8012A15.5

Sequence:


               
               AAACCCAACTTTCAACAATTATTTAGATATTTAGTCTTGGATATTGCTGATAATCCAGTT
GAAAATATAATACGTTTTTTCCCCATGACTAAAGAATTTATTGATGGGAGCTTACAAAGT
GGAGGAAAAGTTCTTGTCCATGGGAATGCAGGGATCTCCAGGAGTGCTGCCTTTGTTATT
GCATACATTATGGAAACATTTGGAATGAAGTACAGGGATGCATTTGCTTATGTTCAAGAA
AGAAGATTTTGTATTAATCCTAATGCTGGATTTGTTCATCAACTTCAGGAATATGAAGCC
ATCTACCTAGCAAAATTAACAATACAGATGATGTCACCCCTTCAGATAGAAAGGTCATTA
TCTGTTCATTCTGGCACCACAGGTAGTTTGAAGAGAACACATGAAGAAGAAGATGATTTT
GGAAACATGCAAGTGGCGACTGCGCAGAATGGCTGACTCAAGAGCAACATTTCGAGGATG
TGGATTTCTATTTGGGAAGGAGAAAATACTAGAGACAGTAATAATATTAAGTGGTAAAAA
CACAAGTAGTTTCTTTTCAGTTATATGTTGCTTCCAGAATTGTTTCTCTGCAACTTGTTG
AGCAACATTTTAAGATATTGGACTTCTGCAATAGATGGTACTGATGGTTTTACCCTTTTT
TTTTTTTTTTTAATTCTTTACAGTTTTATTATAAACCAAGAATTTTGGACTTGCAAAGAG
GTATTATTGCAATAATGCACTTTCATACTTGAAATTTATTTGTATGATATAAAGTTATTA
CTTTAAACAAAATGCAAGTTAGGGGGGGATTTGTTTATAAAATCTGGGTAATTTATAACA
AAAGAATTTCCTAAAGTTTGCTAAAAATTCATTTTGTGTTCTACATATTACATTTAAAAA
ATAATTTTATGGTTCAATTTTACGATGGAGCCTCTTACAGAAACATTAACAAATGCAGGA
ATCTGTCACATTTCTTTTTTAGTATAATTCAATAGCTTAATTATCCTTTTATTTTTTTAA
ACTTTTTGATCTCTTAATAATCTTTAAATCATGACATTGCCAACTGTCCTTACTTTAACA
TGACCCAAGTATTGCTTCTTTTCCTGTTATCTTCCTAATTTTAATCTATAGAAAAAAAAT
GTAAGGAGCAAAGGGAAATGTTTTGTTTTATAATACCAGATGCTCAAAAACAAGGAGAGT
TTTAAACTTTCAAGTGAGTTTCCTTTAGCATTCTTAAAAGCCAAATGTTGTTTTTGTTCT
TTTCAAAGTTGTGTAGCCTGTTTTTTCTTTGTCCAAAATAGTTCTAAATAGAATAAACCA
ATGTAGCACTATTTTTTTCTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCCAACTTTCAACAATTATTTAGATATTTAGTCTTGGATATTGCTGATAATCCAGTT
GAAAATATAATACGTTTTTTCCCCATGACTAAAGAATTTATTGATGGGAGCTTACAAAGT
GGAGGAAAAGTTCTTGTCCATGGGAATGCAGGGATCTCCAGGAGTGCTGCCTTTGTTATT
GCATACATTATGGAAACATTTGGAATGAAGTACAGGGATGCATTTGCTTATGTTCAAGAA
AGAAGATTTTGTATTAATCCTAATGCTGGATTTGTTCATCAACTTCAGGAATATGAAGCC
ATCTACCTAGCAAAATTAACAATACAGATGATGTCACCCCTTCAGATAGAAAGGTCATTA
TCTGTTCATTCTGGCACCACAGGTAGTTTGAAGAGAACACATGAAGAAGAAGATGATTTT
GGAAACATGCAAGTGGCGACTGCGCAGAATGGCTGACTCAAGAGCAACATTTCGAGGATG
TGGATTTCTATTTGGGAAGGAGAAAATACTAGAGACAGTAATAATATTAAGTGGTAAAAA
CACAAGTAGTTTCTTTTCAGTTATATGTTGCTTCCAGAATTGTTTCTCTGCAACTTGTTG
AGCAACATTTTAAGATATTGGACTTCTGCAATAGATGGTACTGATGGTTTTACCCTTTTT
TTTTTTTTTTTAATTCTTTACAGTTTTATTATAAACCAAGAATTTTGGACTTGCAAAGAG
GTATTATTGCAATAATGCACTTTCATACTTGAAATTTATTTGTATGATATAAAGTTATTA
CTTTAAACAAAATGCAAGTTAGGGGGGGATTTGTTTATAAAATCTGGGTAATTTATAACA
AAAGAATTTCCTAAAGTTTGCTAAAAATTCATTTTGTGTTCTACATATTACATTTAAAAA
ATAATTTTATGGTTCAATTTTACGATGGAGCCTCTTACAGAAACATTAACAAATGCAGGA
ATCTGTCACATTTCTTTTTTAGTATAATTCAATAGCTTAATTATCCTTTTATTTTTTTAA
ACTTTTTGATCTCTTAATAATCTTTAAATCATGACATTGCCAACTGTCCTTACTTTAACA
TGACCCAAGTATTGCTTCTTTTCCTGTTATCTTCCTAATTTTAATCTATAGAAAAAAAAT
GTAAGGAGCAAAGGGAAATGTTTTGTTTTATAATACCAGATGCTCAAAAACAAGGAGAGT
TTTAAACTTTCAAGTGAGTTTCCTTTAGCATTCTTAAAAGCCAAATGTTGTTTTTGTTCT
TTTCAAAGTTGTGTAGCCTGTTTTTTCTTTGTCCAAAATAGTTCTAAATAGAATAAACCA
ATGTAGCACTATTTTTTTCTAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1842088|gb|AAB47561.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1842088|gb|AAB47561.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               607-844, gnl|bosTau2|chr3 (39664380-39664611)
               

               
               607-844, gnl|Hg17|chr1 (94418181-94417952)
               

               
               607-844, gnl|Mm7|chr3 (121734023-121734240)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               607-844, gnl|bosTau2|chr3 (39664380-39664611)
               

               
               607-844, gnl|Hg17|chr1 (94418181-94417952)
               

               
               607-844, gnl|Mm7|chr3 (121734023-121734240)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               jca (0.11396)

	607-844, gnl\|bosTau2\|chr3 (39664380-39664611)
	607-844, gnl\|Hg17\|chr1 (94418181-94417952)
	607-844, gnl\|Mm7\|chr3 (121734023-121734240)