Non-Coding RNA Search

Ss1.1-Pig4-TMW8012B05.5

Sequence:


               
               GAATAGGAAGTAAGCACCACTGCCTATGAAGTCTTACTGCCAAAATAATGAACTGAAGGA
ATCAAACCTTCAAATTGAAAACATTTCAAAGCCATGAATTTGGGGAATAGATGGACAAAG
TAAATGGCACCACAAGGAAGCAGCCAAGGCGATCCAGAATTGTGAAAGTCTATAAAACAA
ACGACCTTATTGCCTCAGCTAATGAGTGGCATGAAAAAGAAAAAGGCACTCTTAACATAT
TGAGAGACTTAAAGAGACATATCAACTAAATTGGATATGTGGGCATCACCTGGATCCAGA
TTGAACAAAATGTAAAAAAGACCTTTTGGAGACTGGGTGAAATGTGGACATGCACTGAGT
AGTAAACGATTTTTAGAAATAATTAGTTTTGTTAGGGATAACAATATTGATTTGGTTATT
AAAAAACAAAAGATGCTGTGTGTTAAGAGATATATATATATATATATATATATATATATA
TATATATATGAAATAAGACAGCCAGATTTGCATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAGGAAGTAAGCACCACTGCCTATGAAGTCTTACTGCCAAAATAATGAACTGAAGGA
ATCAAACCTTCAAATTGAAAACATTTCAAAGCCATGAATTTGGGGAATAGATGGACAAAG
TAAATGGCACCACAAGGAAGCAGCCAAGGCGATCCAGAATTGTGAAAGTCTATAAAACAA
ACGACCTTATTGCCTCAGCTAATGAGTGGCATGAAAAAGAAAAAGGCACTCTTAACATAT
TGAGAGACTTAAAGAGACATATCAACTAAATTGGATATGTGGGCATCACCTGGATCCAGA
TTGAACAAAATGTAAAAAAGACCTTTTGGAGACTGGGTGAAATGTGGACATGCACTGAGT
AGTAAACGATTTTTAGAAATAATTAGTTTTGTTAGGGATAACAATATTGATTTGGTTATT
AAAAAACAAAAGATGCTGTGTGTTAAGAGATATATATATATATATATATATATATATATA
TATATATATGAAATAAGACAGCCAGATTTGCATTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               264-383, + strand, RNAz p=0.521503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-383, + strand, RNAz p=0.521503

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               4-393, gnl|bosTau2|chr18 (42982536-42982137)
               

               
               4-393, gnl|canFam2|chr1 (118903759-118904036)
               

               
               4-393, gnl|hg17|chr19 (41519802-41520085)
               

               
               4-393, gnl|Hg17|chr19 (41520478-41519808)
               

               
               4-393, gnl|loxAfr1|scaffold_165285 (437-695)
               

               
               4-393, gnl|oryCun1|scaffold_137504 (1182-1382)
               

               
               4-393, gnl|panTro1|chr20 (39253144-39252861)
               

               
               4-393, gnl|rheMac2|chr19 (42803083-42803364)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-393, gnl|bosTau2|chr18 (42982536-42982137)
               

               
               4-393, gnl|canFam2|chr1 (118903759-118904036)
               

               
               4-393, gnl|hg17|chr19 (41519802-41520085)
               

               
               4-393, gnl|Hg17|chr19 (41520478-41519808)
               

               
               4-393, gnl|loxAfr1|scaffold_165285 (437-695)
               

               
               4-393, gnl|oryCun1|scaffold_137504 (1182-1382)
               

               
               4-393, gnl|panTro1|chr20 (39253144-39252861)
               

               
               4-393, gnl|rheMac2|chr19 (42803083-42803364)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	4-393, gnl\|bosTau2\|chr18 (42982536-42982137)
	4-393, gnl\|canFam2\|chr1 (118903759-118904036)
	4-393, gnl\|hg17\|chr19 (41519802-41520085)
	4-393, gnl\|Hg17\|chr19 (41520478-41519808)
	4-393, gnl\|loxAfr1\|scaffold_165285 (437-695)
	4-393, gnl\|oryCun1\|scaffold_137504 (1182-1382)
	4-393, gnl\|panTro1\|chr20 (39253144-39252861)
	4-393, gnl\|rheMac2\|chr19 (42803083-42803364)